Literature DB >> 11295541

THUMP--a predicted RNA-binding domain shared by 4-thiouridine, pseudouridine synthases and RNA methylases.

L Aravind1, E V Koonin.   

Abstract

Sequence profile searches were used to identify an ancient domain in ThiI-like thiouridine synthases, conserved RNA methylases, archaeal pseudouridine synthases and several uncharacterized proteins. We predict that this domain is an RNA-binding domain that adopts an alpha/beta fold similar to that found in the C-terminal domain of translation initiation factor 3 and ribosomal protein S8.

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Year:  2001        PMID： 11295541     DOI： 10.1016/s0968-0004(01)01826-6

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN： 0968-0004            Impact factor:   13.807


  47 in total

1.  Comparative genomics and evolution of proteins involved in RNA metabolism.

Authors:  Vivek Anantharaman; Eugene V Koonin; L Aravind
Journal:  Nucleic Acids Res       Date:  2002-04-01       Impact factor: 16.971

2.  Crystallization and preliminary X-ray crystallographic analysis of putative tRNA-modification enzymes from Pyrococcus furiosus and Thermus thermophilus.

Authors:  Marcus Fislage; Martine Roovers; Stefan Münnich; Louis Droogmans; Wim Versées
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-10-27

3.  RNA-guided RNA modification: functional organization of the archaeal H/ACA RNP.

Authors:  Daniel L Baker; Osama A Youssef; Michael I R Chastkofsky; David A Dy; Rebecca M Terns; Michael P Terns
Journal:  Genes Dev       Date:  2005-05-03       Impact factor: 11.361

Review 4.  Identification of genes encoding tRNA modification enzymes by comparative genomics.

Authors:  Valérie de Crécy-Lagard
Journal:  Methods Enzymol       Date:  2007       Impact factor: 1.600

5.  Plant-specific ribosome biogenesis factors in Arabidopsis thaliana with essential function in rRNA processing.

Authors:  Denise Palm; Deniz Streit; Thiruvenkadam Shanmugam; Benjamin L Weis; Maike Ruprecht; Stefan Simm; Enrico Schleiff
Journal:  Nucleic Acids Res       Date:  2019-02-28       Impact factor: 16.971

6.  The rhodanese domain of ThiI is both necessary and sufficient for synthesis of the thiazole moiety of thiamine in Salmonella enterica.

Authors:  N Cecilia Martinez-Gomez; Lauren D Palmer; Eugenio Vivas; Peter L Roach; Diana M Downs
Journal:  J Bacteriol       Date:  2011-07-01       Impact factor: 3.490

7.  Mutant Strains of Escherichia coli and Methicillin-Resistant Staphylococcus aureus Obtained by Laboratory Selection To Survive on Metallic Copper Surfaces.

Authors:  Pauline Bleichert; Lucy Bütof; Christian Rückert; Martin Herzberg; Romeu Francisco; Paula V Morais; Gregor Grass; Jörn Kalinowski; Dietrich H Nies
Journal:  Appl Environ Microbiol       Date:  2020-12-17       Impact factor: 4.792

Review 8.  Evolutionary conservation and expression of human RNA-binding proteins and their role in human genetic disease.

Authors:  Stefanie Gerstberger; Markus Hafner; Manuel Ascano; Thomas Tuschl
Journal:  Adv Exp Med Biol       Date:  2014       Impact factor: 2.622

9.  Structure-based experimental confirmation of biochemical function to a methyltransferase, MJ0882, from hyperthermophile Methanococcus jannaschii.

Authors:  Lan Huang; Liwei Hung; Mark Odell; Hisao Yokota; Rosalind Kim; Sung-Hou Kim
Journal:  J Struct Funct Genomics       Date:  2002

10.  Expression, purification, crystallization and preliminary X-ray studies of the TAN1 orthologue from Methanothermobacter thermautotrophicus.

Authors:  Ana P G Silva; Robert T Byrne; Maria Chechik; Callum Smits; David G Waterman; Alfred A Antson
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-10-31
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