Literature DB >> 11226173

A primordial tRNA modification required for the evolution of life?

G R Björk1, K Jacobsson, K Nilsson, M J Johansson, A S Byström, O P Persson.   

Abstract

The evolution of reading frame maintenance must have been an early event, and presumably preceded the emergence of the three domains Archaea, Bacteria and Eukarya. Features evolved early in reading frame maintenance may still exist in present-day organisms. We show that one such feature may be the modified nucleoside 1-methylguanosine (m(1)G37), which prevents frameshifting and is present adjacent to and 3' of the anticodon (position 37) in the same subset of tRNAs from all organisms, including that with the smallest sequenced genome (Mycoplasma genitalium), and organelles. We have identified the genes encoding the enzyme tRNA(m(1)G37)methyltransferase from all three domains. We also show that they are orthologues, and suggest that they originated from a primordial gene. Lack of m(1)G37 severely impairs the growth of a bacterium and a eukaryote to a similar degree. Yeast tRNA(m(1)G37)methyltransferase also synthesizes 1-methylinosine and participates in the formation of the Y-base (yW). Our results suggest that m(1)G37 existed in tRNA before the divergence of the three domains, and that a tRNA(m(1)G37)methyltrans ferase is part of the minimal set of gene products required for life.

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Year:  2001        PMID: 11226173      PMCID: PMC140193          DOI: 10.1093/emboj/20.1.231

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  32 in total

1.  ADEPTs: information necessary for subcellular distribution of eukaryotic sorting isozymes resides in domains missing from eubacterial and archaeal counterparts.

Authors:  D R Stanford; N C Martin; A K Hopper
Journal:  Nucleic Acids Res       Date:  2000-01-15       Impact factor: 16.971

2.  Structural alterations of the tRNA(m1G37)methyltransferase from Salmonella typhimurium affect tRNA substrate specificity.

Authors:  J N Li; G R Björk
Journal:  RNA       Date:  1999-03       Impact factor: 4.942

3.  Global transposon mutagenesis and a minimal Mycoplasma genome.

Authors:  C A Hutchison; S N Peterson; S R Gill; R T Cline; O White; C M Fraser; H O Smith; J C Venter
Journal:  Science       Date:  1999-12-10       Impact factor: 47.728

4.  The RNA Modification Database: 1999 update.

Authors:  J Rozenski; P F Crain; J A McCloskey
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

5.  A new model for phenotypic suppression of frameshift mutations by mutant tRNAs.

Authors:  Q Qian; J N Li; H Zhao; T G Hagervall; P J Farabaugh; G R Björk
Journal:  Mol Cell       Date:  1998-03       Impact factor: 17.970

6.  The universal ancestor.

Authors:  C Woese
Journal:  Proc Natl Acad Sci U S A       Date:  1998-06-09       Impact factor: 11.205

7.  New pyrimidine pathway involved in the biosynthesis of the pyrimidine of thiamine.

Authors:  P C Newell; R G Tucker
Journal:  Nature       Date:  1967-09-23       Impact factor: 49.962

8.  A convenient procedure for preparing transfer ribonucleic acid from Escherichia coli.

Authors:  S Avital; D Elson
Journal:  Biochim Biophys Acta       Date:  1969-04-22

9.  A specific modification next to the anticodon of phenylalanine transfer ribonucleic acid.

Authors:  R Thiebe; H G Zachau
Journal:  Eur J Biochem       Date:  1968-09-24

10.  Transfer RNA modification status influences retroviral ribosomal frameshifting.

Authors:  B A Carlson; S Y Kwon; M Chamorro; S Oroszlan; D L Hatfield; B J Lee
Journal:  Virology       Date:  1999-03-01       Impact factor: 3.616

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  141 in total

Review 1.  The renaissance of aminoacyl-tRNA synthesis.

Authors:  M Ibba; D Söll
Journal:  EMBO Rep       Date:  2001-05       Impact factor: 8.807

2.  Control of catalytic cycle by a pair of analogous tRNA modification enzymes.

Authors:  Thomas Christian; Georges Lahoud; Cuiping Liu; Ya-Ming Hou
Journal:  J Mol Biol       Date:  2010-05-07       Impact factor: 5.469

3.  A domain of the actin binding protein Abp140 is the yeast methyltransferase responsible for 3-methylcytidine modification in the tRNA anti-codon loop.

Authors:  Sonia D'Silva; Steffen J Haider; Eric M Phizicky
Journal:  RNA       Date:  2011-04-25       Impact factor: 4.942

4.  Transfer RNA modifications that alter +1 frameshifting in general fail to affect -1 frameshifting.

Authors:  Jaunius Urbonavicius; Guillaume Stahl; Jérôme M B Durand; Samia N Ben Salem; Qiang Qian; Philip J Farabaugh; Glenn R Björk
Journal:  RNA       Date:  2003-06       Impact factor: 4.942

5.  A primordial RNA modification enzyme: the case of tRNA (m1A) methyltransferase.

Authors:  Martine Roovers; Johan Wouters; Janusz M Bujnicki; Catherine Tricot; Victor Stalon; Henri Grosjean; Louis Droogmans
Journal:  Nucleic Acids Res       Date:  2004-01-22       Impact factor: 16.971

6.  A yeast knockout strain to discriminate between active and inactive tRNA molecules.

Authors:  Renaud Geslain; Franck Martin; Alain Camasses; Gilbert Eriani
Journal:  Nucleic Acids Res       Date:  2003-08-15       Impact factor: 16.971

Review 7.  tRNA biology charges to the front.

Authors:  Eric M Phizicky; Anita K Hopper
Journal:  Genes Dev       Date:  2010-09-01       Impact factor: 11.361

8.  Genome-wide analysis of N1-methyl-adenosine modification in human tRNAs.

Authors:  Mridusmita Saikia; Ye Fu; Mariana Pavon-Eternod; Chuan He; Tao Pan
Journal:  RNA       Date:  2010-05-19       Impact factor: 4.942

9.  1-methylguanosine-deficient tRNA of Salmonella enterica serovar Typhimurium affects thiamine metabolism.

Authors:  Glenn R Björk; Kristina Nilsson
Journal:  J Bacteriol       Date:  2003-02       Impact factor: 3.490

10.  Ubiquitin-related modifier Urm1 acts as a sulphur carrier in thiolation of eukaryotic transfer RNA.

Authors:  Sebastian Leidel; Patrick G A Pedrioli; Tamara Bucher; Renée Brost; Michael Costanzo; Alexander Schmidt; Ruedi Aebersold; Charles Boone; Kay Hofmann; Matthias Peter
Journal:  Nature       Date:  2009-01-14       Impact factor: 49.962

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