Literature DB >> 16943325

A survey of essential gene function in the yeast cell division cycle.

Lisa Yu1, Lourdes Peña Castillo, Sanie Mnaimneh, Timothy R Hughes, Grant W Brown.   

Abstract

Mutations impacting specific stages of cell growth and division have provided a foundation for dissecting mechanisms that underlie cell cycle progression. We have undertaken an objective examination of the yeast cell cycle through flow cytometric analysis of DNA content in TetO(7) promoter mutant strains representing 75% of all essential yeast genes. More than 65% of the strains displayed specific alterations in DNA content, suggesting that reduced function of an essential gene in most cases impairs progression through a specific stage of the cell cycle. Because of the large number of essential genes required for protein biosynthesis, G1 accumulation was the most common phenotype observed in our analysis. In contrast, relatively few mutants displayed S-phase delay, and most of these were defective in genes required for DNA replication or nucleotide metabolism. G2 accumulation appeared to arise from a variety of defects. In addition to providing a global view of the diversity of essential cellular processes that influence cell cycle progression, these data also provided predictions regarding the functions of individual genes: we identified four new genes involved in protein trafficking (NUS1, PHS1, PGA2, PGA3), and we found that CSE1 and SMC4 are important for DNA replication.

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Year:  2006        PMID: 16943325      PMCID: PMC1635385          DOI: 10.1091/mbc.e06-04-0368

Source DB:  PubMed          Journal:  Mol Biol Cell        ISSN: 1059-1524            Impact factor:   4.138


  63 in total

1.  Binding of TBP to promoters in vivo is stimulated by activators and requires Pol II holoenzyme.

Authors:  L Kuras; K Struhl
Journal:  Nature       Date:  1999-06-10       Impact factor: 49.962

2.  Evidence of p53-dependent cross-talk between ribosome biogenesis and the cell cycle: effects of nucleolar protein Bop1 on G(1)/S transition.

Authors:  D G Pestov; Z Strezoska; L F Lau
Journal:  Mol Cell Biol       Date:  2001-07       Impact factor: 4.272

3.  Genetic control of cell size at cell division in yeast.

Authors:  P Nurse
Journal:  Nature       Date:  1975-08-14       Impact factor: 49.962

4.  Condensin binding at distinct and specific chromosomal sites in the Saccharomyces cerevisiae genome.

Authors:  Bi-Dar Wang; David Eyre; Munira Basrai; Michael Lichten; Alexander Strunnikov
Journal:  Mol Cell Biol       Date:  2005-08       Impact factor: 4.272

5.  Functional organization of the yeast proteome by systematic analysis of protein complexes.

Authors:  Anne-Claude Gavin; Markus Bösche; Roland Krause; Paola Grandi; Martina Marzioch; Andreas Bauer; Jörg Schultz; Jens M Rick; Anne-Marie Michon; Cristina-Maria Cruciat; Marita Remor; Christian Höfert; Malgorzata Schelder; Miro Brajenovic; Heinz Ruffner; Alejandro Merino; Karin Klein; Manuela Hudak; David Dickson; Tatjana Rudi; Volker Gnau; Angela Bauch; Sonja Bastuck; Bettina Huhse; Christina Leutwein; Marie-Anne Heurtier; Richard R Copley; Angela Edelmann; Erich Querfurth; Vladimir Rybin; Gerard Drewes; Manfred Raida; Tewis Bouwmeester; Peer Bork; Bertrand Seraphin; Bernhard Kuster; Gitte Neubauer; Giulio Superti-Furga
Journal:  Nature       Date:  2002-01-10       Impact factor: 49.962

6.  Components and dynamics of DNA replication complexes in S. cerevisiae: redistribution of MCM proteins and Cdc45p during S phase.

Authors:  O M Aparicio; D M Weinstein; S P Bell
Journal:  Cell       Date:  1997-10-03       Impact factor: 41.582

7.  Genetic control of the cell division cycle in yeast. II. Genes controlling DNA replication and its initiation.

Authors:  L H Hartwell
Journal:  J Mol Biol       Date:  1971-07-14       Impact factor: 5.469

8.  Role of essential genes in mitochondrial morphogenesis in Saccharomyces cerevisiae.

Authors:  Katrin Altmann; Benedikt Westermann
Journal:  Mol Biol Cell       Date:  2005-08-31       Impact factor: 4.138

9.  Yeast Rio1p is the founding member of a novel subfamily of protein serine kinases involved in the control of cell cycle progression.

Authors:  Michaela Angermayr; Andreas Roidl; Wolfhard Bandlow
Journal:  Mol Microbiol       Date:  2002-04       Impact factor: 3.501

10.  Assigning function to yeast proteins by integration of technologies.

Authors:  Tony R Hazbun; Lars Malmström; Scott Anderson; Beth J Graczyk; Bethany Fox; Michael Riffle; Bryan A Sundin; J Derringer Aranda; W Hayes McDonald; Chun-Hwei Chiu; Brian E Snydsman; Phillip Bradley; Eric G D Muller; Stanley Fields; David Baker; John R Yates; Trisha N Davis
Journal:  Mol Cell       Date:  2003-12       Impact factor: 17.970

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  50 in total

Review 1.  cis-Prenyltransferase: New Insights into Protein Glycosylation, Rubber Synthesis, and Human Diseases.

Authors:  Kariona A Grabińska; Eon Joo Park; William C Sessa
Journal:  J Biol Chem       Date:  2016-07-11       Impact factor: 5.157

2.  Mutation of Nogo-B receptor, a subunit of cis-prenyltransferase, causes a congenital disorder of glycosylation.

Authors:  Eon Joo Park; Kariona A Grabińska; Ziqiang Guan; Viktor Stránecký; Hana Hartmannová; Kateřina Hodaňová; Veronika Barešová; Jana Sovová; Levente Jozsef; Nina Ondrušková; Hana Hansíková; Tomáš Honzík; Jiří Zeman; Helena Hůlková; Rong Wen; Stanislav Kmoch; William C Sessa
Journal:  Cell Metab       Date:  2014-07-24       Impact factor: 27.287

3.  Nogo-B receptor is necessary for cellular dolichol biosynthesis and protein N-glycosylation.

Authors:  Kenneth D Harrison; Eon Joo Park; Ningguo Gao; Andrew Kuo; Jeffrey S Rush; Charles J Waechter; Mark A Lehrman; William C Sessa
Journal:  EMBO J       Date:  2011-05-13       Impact factor: 11.598

4.  Structural elucidation of the cis-prenyltransferase NgBR/DHDDS complex reveals insights in regulation of protein glycosylation.

Authors:  Ban H Edani; Kariona A Grabińska; Rong Zhang; Eon Joo Park; Benjamin Siciliano; Liliana Surmacz; Ya Ha; William C Sessa
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-12       Impact factor: 11.205

5.  Systematic analysis of essential genes reveals important regulators of G protein signaling.

Authors:  Steven D Cappell; Rachael Baker; Dorota Skowyra; Henrik G Dohlman
Journal:  Mol Cell       Date:  2010-06-11       Impact factor: 17.970

6.  Effects on vesicular transport pathways at the late endosome in cells with limited very long-chain fatty acids.

Authors:  Keisuke Obara; Ryo Kojima; Akio Kihara
Journal:  J Lipid Res       Date:  2013-01-16       Impact factor: 5.922

7.  Ribosomal protein L35 is required for 27SB pre-rRNA processing in Saccharomyces cerevisiae.

Authors:  Reyes Babiano; Jesús de la Cruz
Journal:  Nucleic Acids Res       Date:  2010-04-14       Impact factor: 16.971

Review 8.  Cellular apoptosis susceptibility (CSE1L/CAS) protein in cancer metastasis and chemotherapeutic drug-induced apoptosis.

Authors:  Cheng-Jeng Tai; Chung-Huei Hsu; Shing-Chuan Shen; Woan-Ruoh Lee; Ming-Chung Jiang
Journal:  J Exp Clin Cancer Res       Date:  2010-08-11

Review 9.  Functional annotations for the Saccharomyces cerevisiae genome: the knowns and the known unknowns.

Authors:  Karen R Christie; Eurie L Hong; J Michael Cherry
Journal:  Trends Microbiol       Date:  2009-07-02       Impact factor: 17.079

10.  Utilizing gene pair orientations for HMM-based analysis of promoter array ChIP-chip data.

Authors:  Michael Seifert; Jens Keilwagen; Marc Strickert; Ivo Grosse
Journal:  Bioinformatics       Date:  2009-04-28       Impact factor: 6.937

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