Literature DB >> 20810645

tRNA biology charges to the front.

Eric M Phizicky1, Anita K Hopper.   

Abstract

tRNA biology has come of age, revealing an unprecedented level of understanding and many unexpected discoveries along the way. This review highlights new findings on the diverse pathways of tRNA maturation, and on the formation and function of a number of modifications. Topics of special focus include the regulation of tRNA biosynthesis, quality control tRNA turnover mechanisms, widespread tRNA cleavage pathways activated in response to stress and other growth conditions, emerging evidence of signaling pathways involving tRNA and cleavage fragments, and the sophisticated intracellular tRNA trafficking that occurs during and after biosynthesis.

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Year:  2010        PMID： 20810645      PMCID： PMC2932967          DOI： 10.1101/gad.1956510

Source DB:  PubMed          Journal:  Genes Dev        ISSN： 0890-9369            Impact factor:   11.361


  379 in total

1.  Retrograde nuclear accumulation of cytoplasmic tRNA in rat hepatoma cells in response to amino acid deprivation.

Authors:  Hussam H Shaheen; Rick L Horetsky; Scot R Kimball; Athulaprabha Murthi; Leonard S Jefferson; Anita K Hopper
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-14       Impact factor: 11.205

2.  tRNA ligase is required for regulated mRNA splicing in the unfolded protein response.

Authors:  C Sidrauski; J S Cox; P Walter
Journal:  Cell       Date:  1996-11-01       Impact factor: 41.582

3.  Precise excision of intervening sequences from precursor tRNAs by a membrane-associated yeast endonuclease.

Authors:  C L Peebles; P Gegenheimer; J Abelson
Journal:  Cell       Date:  1983-02       Impact factor: 41.582

4.  The yeast La protein is required for the 3' endonucleolytic cleavage that matures tRNA precursors.

Authors:  C J Yoo; S L Wolin
Journal:  Cell       Date:  1997-05-02       Impact factor: 41.582

5.  Mechanism and a peptide motif for targeting peripheral proteins to the yeast inner nuclear membrane.

Authors:  Tsung-Po Lai; Karen A Stauffer; Athulaprabha Murthi; Hussam H Shaheen; Gang Peng; Nancy C Martin; Anita K Hopper
Journal:  Traffic       Date:  2009-06-15       Impact factor: 6.215

6.  Identification and characterization of a novel cytoplasm protein ICF45 that is involved in cell cycle regulation.

Authors:  Deliang Guo; Kun Hu; Ying Lei; Yongchao Wang; Tianlin Ma; Dacheng He
Journal:  J Biol Chem       Date:  2004-09-29       Impact factor: 5.157

7.  Nuclear surveillance and degradation of hypomodified initiator tRNAMet in S. cerevisiae.

Authors:  Sujatha Kadaba; Anna Krueger; Tamyra Trice; Annette M Krecic; Alan G Hinnebusch; James Anderson
Journal:  Genes Dev       Date:  2004-05-14       Impact factor: 11.361

8.  The role of exportin-t in selective nuclear export of mature tRNAs.

Authors:  G J Arts; S Kuersten; P Romby; B Ehresmann; I W Mattaj
Journal:  EMBO J       Date:  1998-12-15       Impact factor: 11.598

9.  Functional conservation of tRNase ZL among Saccharomyces cerevisiae, Schizosaccharomyces pombe and humans.

Authors:  Zhen Zhao; Wenchen Su; Sheng Yuan; Ying Huang
Journal:  Biochem J       Date:  2009-08-27       Impact factor: 3.857

10.  Bacteriophage T4 anticodon nuclease, polynucleotide kinase and RNA ligase reprocess the host lysine tRNA.

Authors:  M Amitsur; R Levitz; G Kaufmann
Journal:  EMBO J       Date:  1987-08       Impact factor: 11.598
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  380 in total

1.  Structure and mechanism of the tRNA-dependent lantibiotic dehydratase NisB.

Authors:  Manuel A Ortega; Yue Hao; Qi Zhang; Mark C Walker; Wilfred A van der Donk; Satish K Nair
Journal:  Nature       Date:  2014-10-26       Impact factor: 49.962

2.  tRNAs marked with CCACCA are targeted for degradation.

Authors:  Jeremy E Wilusz; Joseph M Whipple; Eric M Phizicky; Phillip A Sharp
Journal:  Science       Date:  2011-11-11       Impact factor: 47.728

3.  A domain of the actin binding protein Abp140 is the yeast methyltransferase responsible for 3-methylcytidine modification in the tRNA anti-codon loop.

Authors:  Sonia D'Silva; Steffen J Haider; Eric M Phizicky
Journal:  RNA       Date:  2011-04-25       Impact factor: 4.942

4.  Actin-binding protein ABP140 is a methyltransferase for 3-methylcytidine at position 32 of tRNAs in Saccharomyces cerevisiae.

Authors:  Akiko Noma; Sanghyun Yi; Takayuki Katoh; Yoshimi Takai; Takeo Suzuki; Tsutomu Suzuki
Journal:  RNA       Date:  2011-04-25       Impact factor: 4.942

5.  Unassigned codons, nonsense suppression, and anticodon modifications in the evolution of the genetic code.

Authors:  Peter T S van der Gulik; Wouter D Hoff
Journal:  J Mol Evol       Date:  2011-11-11       Impact factor: 2.395

6.  Kinetics of tRNA folding monitored by aminoacylation.

Authors:  Hari Bhaskaran; Annia Rodriguez-Hernandez; John J Perona
Journal:  RNA       Date:  2012-01-27       Impact factor: 4.942

7.  PRORP proteins support RNase P activity in both organelles and the nucleus in Arabidopsis.

Authors:  Bernard Gutmann; Anthony Gobert; Philippe Giegé
Journal:  Genes Dev       Date:  2012-05-01       Impact factor: 11.361

8.  Beyond tRNA cleavage: novel essential function for yeast tRNA splicing endonuclease unrelated to tRNA processing.

Authors:  Nripesh Dhungel; Anita K Hopper
Journal:  Genes Dev       Date:  2012-03-01       Impact factor: 11.361

9.  Transfer RNA as a source of small functional RNA.

Authors:  Megumi Shigematsu; Shozo Honda; Yohei Kirino
Journal:  J Mol Biol Mol Imaging       Date:  2014

10.  Broad and adaptable RNA structure recognition by the human interferon-induced tetratricopeptide repeat protein IFIT5.

Authors:  George E Katibah; Yidan Qin; David J Sidote; Jun Yao; Alan M Lambowitz; Kathleen Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-04       Impact factor: 11.205
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