Literature DB >> 15894642

Osmolyte trimethylamine-N-oxide does not affect the strength of hydrophobic interactions: origin of osmolyte compatibility.

Manoj V Athawale1, Jonathan S Dordick, Shekhar Garde.   

Abstract

Osmolytes are small organic solutes accumulated at high concentrations by cells/tissues in response to osmotic stress. Osmolytes increase thermodynamic stability of folded proteins and provide protection against denaturing stresses. The mechanism of osmolyte compatibility and osmolyte-induced stability has, therefore, attracted considerable attention in recent years. However, to our knowledge, no quantitative study of osmolyte effects on the strength of hydrophobic interactions has been reported. Here, we present a detailed molecular dynamics simulation study of the effect of the osmolyte trimethylamine-N-oxide (TMAO) on hydrophobic phenomena at molecular and nanoscopic length scales. Specifically, we investigate the effects of TMAO on the thermodynamics of hydrophobic hydration and interactions of small solutes as well as on the folding-unfolding conformational equilibrium of a hydrophobic polymer in water. The major conclusion of our study is that TMAO has almost no effect either on the thermodynamics of hydration of small nonpolar solutes or on the hydrophobic interactions at the pair and many-body level. We propose that this neutrality of TMAO toward hydrophobic interactions-one of the primary driving forces in protein folding-is at least partially responsible for making TMAO a "compatible" osmolyte. That is, TMAO can be tolerated at high concentrations in organisms without affecting nonspecific hydrophobic effects. Our study implies that protein stabilization by TMAO occurs through other mechanisms, such as unfavorable water-mediated interaction of TMAO with the protein backbone, as suggested by recent experimental studies. We complement the above calculations with analysis of TMAO hydration and changes in water structure in the presence of TMAO molecules. TMAO is an amphiphilic molecule containing both hydrophobic and hydrophilic parts. The precise balance of the effects of hydrophobic and hydrophilic segments of the molecule appears to explain the virtual noneffect of TMAO on the strength of hydrophobic interactions.

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Year:  2005        PMID: 15894642      PMCID: PMC1366635          DOI: 10.1529/biophysj.104.056671

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  30 in total

1.  Osmotic stress, crowding, preferential hydration, and binding: A comparison of perspectives.

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Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-11       Impact factor: 11.205

2.  Relationship between structural order and the anomalies of liquid water.

Authors:  J R Errington; P G Debenedetti
Journal:  Nature       Date:  2001-01-18       Impact factor: 49.962

3.  Towards a quantification of disorder in materials: distinguishing equilibrium and glassy sphere packings

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Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  2000-07

4.  Molecular dynamics simulations of pressure effects on hydrophobic interactions.

Authors:  T Ghosh; A E García; S Garde
Journal:  J Am Chem Soc       Date:  2001-11-07       Impact factor: 15.419

Review 5.  The osmophobic effect: natural selection of a thermodynamic force in protein folding.

Authors:  D W Bolen; I V Baskakov
Journal:  J Mol Biol       Date:  2001-07-27       Impact factor: 5.469

6.  Estimating hydration changes upon biomolecular reactions from osmotic stress, high pressure, and preferential hydration experiments.

Authors:  Seishi Shimizu
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-19       Impact factor: 11.205

7.  Size dependent ion hydration, its asymmetry, and convergence to macroscopic behavior.

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8.  Hydration of krypton and consideration of clathrate models of hydrophobic effects from the perspective of quasi-chemical theory.

Authors:  Henry S Ashbaugh; D Asthagiri; Lawrence R Pratt; Susan B Rempe
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9.  Stabilization of protein structure by sugars.

Authors:  T Arakawa; S N Timasheff
Journal:  Biochemistry       Date:  1982-12-07       Impact factor: 3.162

10.  Mechanism of protein salting in and salting out by divalent cation salts: balance between hydration and salt binding.

Authors:  T Arakawa; S N Timasheff
Journal:  Biochemistry       Date:  1984-12-04       Impact factor: 3.162

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  22 in total

1.  Protein folding, stability, and solvation structure in osmolyte solutions.

Authors:  Jörg Rösgen; B Montgomery Pettitt; David Wayne Bolen
Journal:  Biophys J       Date:  2005-08-19       Impact factor: 4.033

2.  How osmolytes influence hydrophobic polymer conformations: A unified view from experiment and theory.

Authors:  Jagannath Mondal; Duncan Halverson; Isaac T S Li; Guillaume Stirnemann; Gilbert C Walker; Bruce J Berne
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-13       Impact factor: 11.205

3.  An effective solvent theory connecting the underlying mechanisms of osmolytes and denaturants for protein stability.

Authors:  Apichart Linhananta; Shirin Hadizadeh; Steven Samuel Plotkin
Journal:  Biophys J       Date:  2011-01-19       Impact factor: 4.033

4.  Molecular mechanism for the preferential exclusion of TMAO from protein surfaces.

Authors:  Deepak R Canchi; Pruthvi Jayasimha; Donald C Rau; George I Makhatadze; Angel E Garcia
Journal:  J Phys Chem B       Date:  2012-10-01       Impact factor: 2.991

5.  When does trimethylamine N-oxide fold a polymer chain and urea unfold it?

Authors:  Jagannath Mondal; Guillaume Stirnemann; B J Berne
Journal:  J Phys Chem B       Date:  2013-07-10       Impact factor: 2.991

6.  Solute's perspective on how trimethylamine oxide, urea, and guanidine hydrochloride affect water's hydrogen bonding ability.

Authors:  Ileana M Pazos; Feng Gai
Journal:  J Phys Chem B       Date:  2012-10-09       Impact factor: 2.991

7.  Solvation free energy of the peptide group: its model dependence and implications for the additive-transfer free-energy model of protein stability.

Authors:  Dheeraj S Tomar; D Asthagiri; Valéry Weber
Journal:  Biophys J       Date:  2013-09-17       Impact factor: 4.033

8.  1H NMR metabolomics study of age profiling in children.

Authors:  Haiwei Gu; Zhengzheng Pan; Bowei Xi; Bryan E Hainline; Narasimhamurthy Shanaiah; Vincent Asiago; G A Nagana Gowda; Daniel Raftery
Journal:  NMR Biomed       Date:  2009-10       Impact factor: 4.044

9.  Counteraction of urea by trimethylamine N-oxide is due to direct interaction.

Authors:  Filip Meersman; Daniel Bowron; Alan K Soper; Michel H J Koch
Journal:  Biophys J       Date:  2009-11-04       Impact factor: 4.033

10.  Molecular basis of transport and regulation in the Na(+)/betaine symporter BetP.

Authors:  Susanne Ressl; Anke C Terwisscha van Scheltinga; Clemens Vonrhein; Vera Ott; Christine Ziegler
Journal:  Nature       Date:  2009-03-05       Impact factor: 49.962

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