Literature DB >> 26170324

How osmolytes influence hydrophobic polymer conformations: A unified view from experiment and theory.

Jagannath Mondal1, Duncan Halverson2, Isaac T S Li2, Guillaume Stirnemann3, Gilbert C Walker2, Bruce J Berne4.   

Abstract

It is currently the consensus belief that protective osmolytes such as trimethylamine N-oxide (TMAO) favor protein folding by being excluded from the vicinity of a protein, whereas denaturing osmolytes such as urea lead to protein unfolding by strongly binding to the surface. Despite there being consensus on how TMAO and urea affect proteins as a whole, very little is known as to their effects on the individual mechanisms responsible for protein structure formation, especially hydrophobic association. In the present study, we use single-molecule atomic force microscopy and molecular dynamics simulations to investigate the effects of TMAO and urea on the unfolding of the hydrophobic homopolymer polystyrene. Incorporated with interfacial energy measurements, our results show that TMAO and urea act on polystyrene as a protectant and a denaturant, respectively, while complying with Tanford-Wyman preferential binding theory. We provide a molecular explanation suggesting that TMAO molecules have a greater thermodynamic binding affinity with the collapsed conformation of polystyrene than with the extended conformation, while the reverse is true for urea molecules. Results presented here from both experiment and simulation are in line with earlier predictions on a model Lennard-Jones polymer while also demonstrating the distinction in the mechanism of osmolyte action between protein and hydrophobic polymer. This marks, to our knowledge, the first experimental observation of TMAO-induced hydrophobic collapse in a ternary aqueous system.

Entities:  

Keywords:  TMAO; free energy; preferential binding; single-molecule force spectroscopy; urea

Mesh:

Substances:

Year:  2015        PMID: 26170324      PMCID: PMC4522754          DOI: 10.1073/pnas.1511780112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  45 in total

1.  Osmotic stress, crowding, preferential hydration, and binding: A comparison of perspectives.

Authors:  V A Parsegian; R P Rand; D C Rau
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-11       Impact factor: 11.205

2.  Conformational dynamics and internal friction in homopolymer globules: equilibrium vs. non-equilibrium simulations.

Authors:  T R Einert; C E Sing; A Alexander-Katz; R R Netz
Journal:  Eur Phys J E Soft Matter       Date:  2011-12-14       Impact factor: 1.890

3.  The effect of temperature on single-polypeptide adsorption.

Authors:  Sandra Kienle; Susanne Liese; Nadine Schwierz; Roland R Netz; Thorsten Hugel
Journal:  Chemphyschem       Date:  2012-01-31       Impact factor: 3.102

4.  Metrics that differentiate the origins of osmolyte effects on protein stability: a test of the surface tension proposal.

Authors:  Matthew Auton; Allan Chris M Ferreon; D Wayne Bolen
Journal:  J Mol Biol       Date:  2006-08-04       Impact factor: 5.469

5.  When does trimethylamine N-oxide fold a polymer chain and urea unfold it?

Authors:  Jagannath Mondal; Guillaume Stirnemann; B J Berne
Journal:  J Phys Chem B       Date:  2013-07-10       Impact factor: 2.991

6.  Hofmeister salt effects on surface tension arise from partitioning of anions and cations between bulk water and the air-water interface.

Authors:  Laurel M Pegram; M Thomas Record
Journal:  J Phys Chem B       Date:  2007-04-14       Impact factor: 2.991

7.  Vapor pressure osmometry studies of osmolyte-protein interactions: implications for the action of osmoprotectants in vivo and for the interpretation of "osmotic stress" experiments in vitro.

Authors:  E S Courtenay; M W Capp; C F Anderson; M T Record
Journal:  Biochemistry       Date:  2000-04-18       Impact factor: 3.162

8.  The peptide backbone plays a dominant role in protein stabilization by naturally occurring osmolytes.

Authors:  Y Liu; D W Bolen
Journal:  Biochemistry       Date:  1995-10-03       Impact factor: 3.162

9.  Optimization of the additive CHARMM all-atom protein force field targeting improved sampling of the backbone φ, ψ and side-chain χ(1) and χ(2) dihedral angles.

Authors:  Robert B Best; Xiao Zhu; Jihyun Shim; Pedro E M Lopes; Jeetain Mittal; Michael Feig; Alexander D Mackerell
Journal:  J Chem Theory Comput       Date:  2012-07-18       Impact factor: 6.006

10.  Single-molecule adhesion of a stimuli-responsive oligo(ethylene glycol) copolymer to gold.

Authors:  Michael A Nash; Hermann E Gaub
Journal:  ACS Nano       Date:  2012-11-06       Impact factor: 15.881

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  12 in total

1.  Probing Small Molecule Binding to Unfolded Polyprotein Based on its Elasticity and Refolding.

Authors:  Ricksen S Winardhi; Qingnan Tang; Jin Chen; Mingxi Yao; Jie Yan
Journal:  Biophys J       Date:  2016-12-06       Impact factor: 4.033

2.  Folding recombinant spider-silk in H2 O: Effect of osmolytes on the solution conformation of a 15-repeat spider-silk mimetic.

Authors:  Glendon D McLachlan; Babak Gandjian; Hind Alhumaidan
Journal:  Protein Sci       Date:  2016-08-19       Impact factor: 6.725

3.  Mechanism of salt-induced activity enhancement of a marine-derived laccase, Lac15.

Authors:  Jie Li; Yanan Xie; Rui Wang; Zemin Fang; Wei Fang; Xuecheng Zhang; Yazhong Xiao
Journal:  Eur Biophys J       Date:  2017-09-05       Impact factor: 1.733

4.  Nanomechanical properties of steric zipper globular structures.

Authors:  Neta Lester-Zer; Mnar Ghrayeb; Liraz Chai
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-21       Impact factor: 11.205

5.  Trimethylamine N-oxide stabilizes proteins via a distinct mechanism compared with betaine and glycine.

Authors:  Yi-Ting Liao; Anthony C Manson; Michael R DeLyser; William G Noid; Paul S Cremer
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-22       Impact factor: 11.205

6.  TMAO-Protein Preferential Interaction Profile Determines TMAO's Conditional In Vivo Compatibility.

Authors:  Jiang Hong; Shangqin Xiong
Journal:  Biophys J       Date:  2016-11-01       Impact factor: 4.033

7.  Preferential Binding of Urea to Single-Stranded DNA Structures: A Molecular Dynamics Study.

Authors:  Ewa Anna Oprzeska-Zingrebe; Jens Smiatek
Journal:  Biophys J       Date:  2018-04-10       Impact factor: 4.033

8.  Choline Diet and Its Gut Microbe-Derived Metabolite, Trimethylamine N-Oxide, Exacerbate Pressure Overload-Induced Heart Failure.

Authors:  Chelsea L Organ; Hiroyuki Otsuka; Shashi Bhushan; Zeneng Wang; Jessica Bradley; Rishi Trivedi; David J Polhemus; W H Wilson Tang; Yuping Wu; Stanley L Hazen; David J Lefer
Journal:  Circ Heart Fail       Date:  2015-12-23       Impact factor: 8.790

9.  A Rationalization of the Effect That TMAO, Glycine, and Betaine Exert on the Collapse of Elastin-like Polypeptides.

Authors:  Andrea Pica; Giuseppe Graziano
Journal:  Life (Basel)       Date:  2022-01-18

10.  Polyol and sugar osmolytes can shorten protein hydrogen bonds to modulate function.

Authors:  Jingwen Li; Jingfei Chen; Liaoyuan An; Xiaoxiang Yuan; Lishan Yao
Journal:  Commun Biol       Date:  2020-09-23
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