Literature DB >> 15855270

The retinal chromophore/chloride ion pair: structure of the photoisomerization path and interplay of charge transfer and covalent states.

Alessandro Cembran1, Fernando Bernardi, Massimo Olivucci, Marco Garavelli.   

Abstract

Ab initio multi-reference second-order perturbation theory computations are used to explore the photochemical behavior of two ion pairs constituted by a chloride counterion interacting with either a rhodopsin or bacteriorhodopsin chromophore model (i.e., the 4-cis-gamma-methylnona-2,4,6,8-tetraeniminium and all-trans-nona-2,4,6,8-tetraeniminium cations, respectively). Significant counterion effects on the structure of the photoisomerization paths are unveiled by comparison with the paths of the same chromophores in vacuo. Indeed, we demonstrate that the counterion (i) modulates the relative stability of the S0, S1, and S2 energy surfaces leading to an S1 isomerization energy profile where the S1 and S2 states are substantially degenerate; (ii) leads to the emergence of significant S1 energy barriers along all of the isomerization paths except the one mimicking the 11-cis --> all-trans isomerization of the rhodopsin chromophore model; and (iii) changes the nature of the S1 --> S0 decay funnel that becomes a stable excited state minimum when the isomerizing double bond is located at the center of the chromophore moiety. We show that these (apparently very different) counterion effects can be rationalized on the basis of a simple qualitative electrostatic model, which also provides a crude basis for understanding the behavior of retinal protonated Schiff bases in solution.

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Year:  2005        PMID: 15855270      PMCID: PMC1088357          DOI: 10.1073/pnas.0408723102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  23 in total

1.  Reaction path analysis of the "tunable" photoisomerization selectivity of free and locked retinal chromophores.

Authors:  Luca De Vico; Christopher S Page; Marco Garavelli; Fernando Bernardi; Riccardo Basosi; Massimo Olivucci
Journal:  J Am Chem Soc       Date:  2002-04-17       Impact factor: 15.419

2.  Bicycle-pedal model for the first step in the vision process.

Authors:  A Warshel
Journal:  Nature       Date:  1976-04-22       Impact factor: 49.962

Review 3.  Chemical dynamics in proteins: the photoisomerization of retinal in bacteriorhodopsin.

Authors:  F Gai; K C Hasson; J C McDonald; P A Anfinrud
Journal:  Science       Date:  1998-03-20       Impact factor: 47.728

4.  The photoisomerization of retinal in bacteriorhodospin: experimental evidence for a three-state model.

Authors:  K C Hasson; F Gai; P A Anfinrud
Journal:  Proc Natl Acad Sci U S A       Date:  1996-12-24       Impact factor: 11.205

5.  Retinal analog study of the role of steric interactions in the excited state isomerization dynamics of rhodopsin.

Authors:  G G Kochendoerfer; P J Verdegem; I van der Hoef; J Lugtenburg; R A Mathies
Journal:  Biochemistry       Date:  1996-12-17       Impact factor: 3.162

6.  Anion-induced wavelength regulation of absorption maxima of Schiff bases of retinal.

Authors:  P E Blatz; J H Mohler; H V Navangul
Journal:  Biochemistry       Date:  1972-02-29       Impact factor: 3.162

7.  Energetics of enzyme catalysis.

Authors:  A Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  1978-11       Impact factor: 11.205

8.  Counterion controlled photoisomerization of retinal chromophore models: a computational investigation.

Authors:  Alessandro Cembran; Fernando Bernardi; Massimo Olivucci; Marco Garavelli
Journal:  J Am Chem Soc       Date:  2004-12-15       Impact factor: 15.419

9.  Visual-pigment spectra: implications of the protonation of the retinal Schiff base.

Authors:  B Honig; A D Greenberg; U Dinur; T G Ebrey
Journal:  Biochemistry       Date:  1976-10-19       Impact factor: 3.162

10.  NMR constraints on the location of the retinal chromophore in rhodopsin and bathorhodopsin.

Authors:  M Han; S O Smith
Journal:  Biochemistry       Date:  1995-01-31       Impact factor: 3.162

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  10 in total

1.  Aborted double bicycle-pedal isomerization with hydrogen bond breaking is the primary event of bacteriorhodopsin proton pumping.

Authors:  Piero Altoè; Alessandro Cembran; Massimo Olivucci; Marco Garavelli
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-03       Impact factor: 11.205

2.  Molecular bases for the selection of the chromophore of animal rhodopsins.

Authors:  Hoi Ling Luk; Federico Melaccio; Silvia Rinaldi; Samer Gozem; Massimo Olivucci
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-25       Impact factor: 11.205

3.  First steps of retinal photoisomerization in proteorhodopsin.

Authors:  Martin O Lenz; Robert Huber; Bernhard Schmidt; Peter Gilch; Rolf Kalmbach; Martin Engelhard; Josef Wachtveitl
Journal:  Biophys J       Date:  2006-04-07       Impact factor: 4.033

4.  How a small change in retinal leads to G-protein activation: initial events suggested by molecular dynamics calculations.

Authors:  Paul S Crozier; Mark J Stevens; Thomas B Woolf
Journal:  Proteins       Date:  2007-02-15

Review 5.  Microbial and animal rhodopsins: structures, functions, and molecular mechanisms.

Authors:  Oliver P Ernst; David T Lodowski; Marcus Elstner; Peter Hegemann; Leonid S Brown; Hideki Kandori
Journal:  Chem Rev       Date:  2013-12-23       Impact factor: 60.622

6.  Control of Protonated Schiff Base Excited State Decay within Visual Protein Mimics: A Unified Model for Retinal Chromophores.

Authors:  Baptiste Demoulin; Margherita Maiuri; Tetyana Berbasova; James H Geiger; Babak Borhan; Marco Garavelli; Giulio Cerullo; Ivan Rivalta
Journal:  Chemistry       Date:  2021-10-28       Impact factor: 5.236

7.  Multistate Multiconfiguration Quantum Chemical Computation of the Two-Photon Absorption Spectra of Bovine Rhodopsin.

Authors:  Samira Gholami; Laura Pedraza-González; Xuchun Yang; Alexander A Granovsky; Ilya N Ioffe; Massimo Olivucci
Journal:  J Phys Chem Lett       Date:  2019-10-03       Impact factor: 6.475

8.  The molecular structure of a curl-shaped retinal isomer.

Authors:  Robert Send; Dage Sundholm
Journal:  J Mol Model       Date:  2008-03-20       Impact factor: 1.810

Review 9.  Computational photochemistry of retinal proteins.

Authors:  Marius Wanko; Michael Hoffmann; Thomas Frauenheim; Marcus Elstner
Journal:  J Comput Aided Mol Des       Date:  2006-10-17       Impact factor: 4.179

10.  Direct evidence for hula twist and single-bond rotation photoproducts.

Authors:  Aaron Gerwien; Monika Schildhauer; Stefan Thumser; Peter Mayer; Henry Dube
Journal:  Nat Commun       Date:  2018-06-28       Impact factor: 14.919

  10 in total

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