Literature DB >> 281676

Energetics of enzyme catalysis.

A Warshel.   

Abstract

Quantitative studies of the energetics of enzymatic reactions and the corresponding reactions in aqueous solutions indicate that charge stabilization is the most important energy contribution in enzyme catalysis. Low electrostatic stabilization in aqueous solutions is shown to be consistent with surprisingly large electrostatic stabilization effects in active sites of enzymes. This is established quantitatively by comparing the relative stabilization of the transition states of the reaction of lysozyme and the corresponding reaction is aqueous solution.

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Year:  1978        PMID: 281676      PMCID: PMC392938          DOI: 10.1073/pnas.75.11.5250

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  15 in total

1.  Studies of asymmetry in the three-dimensional structure of lobster D-glyceraldehyde-3-phosphate dehydrogenase.

Authors:  D Moras; K W Olsen; M N Sabesan; M Buehner; G C Ford; M G Rossmann
Journal:  J Biol Chem       Date:  1975-12-10       Impact factor: 5.157

2.  Crystallographic study of the binding of dipeptide inhibitors to thermolysin: implications for the mechanism of catalysis.

Authors:  W R Kester; B W Matthews
Journal:  Biochemistry       Date:  1977-05-31       Impact factor: 3.162

Review 3.  Physical organic models for the mechanism of lysozyme action.

Authors:  B M Dunn; T C Bruice
Journal:  Adv Enzymol Relat Areas Mol Biol       Date:  1973

4.  Crystallographic studies of the activity of hen egg-white lysozyme.

Authors:  C C Blake; L N Johnson; G A Mair; A C North; D C Phillips; V R Sarma
Journal:  Proc R Soc Lond B Biol Sci       Date:  1967-04-18

5.  The mechanisms of hydrolysis of glycosides and their revelance to enzyme-catalysed reactions.

Authors:  C A Vernon
Journal:  Proc R Soc Lond B Biol Sci       Date:  1967-04-18

6.  Conformational equilibria and the salt bridge in chymotrypsin.

Authors:  A R Fersht
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1972

7.  Lysozyme-catalyzed reaction of the N-acetylglucosamine hexasaccharide. Dependence of rate on pH.

Authors:  S K Banerjee; I Kregar; V Turk; J A Rupley
Journal:  J Biol Chem       Date:  1973-07-10       Impact factor: 5.157

8.  Subtilisin; a stereochemical mechanism involving transition-state stabilization.

Authors:  J D Robertus; J Kraut; R A Alden; J J Birktoft
Journal:  Biochemistry       Date:  1972-11-07       Impact factor: 3.162

9.  Entropic contributions to rate accelerations in enzymic and intramolecular reactions and the chelate effect.

Authors:  M I Page; W P Jencks
Journal:  Proc Natl Acad Sci U S A       Date:  1971-08       Impact factor: 11.205

10.  Stereochemistry of cooperative effects in haemoglobin.

Authors:  M F Perutz
Journal:  Nature       Date:  1970-11-21       Impact factor: 49.962

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  107 in total

1.  Contribution of active site residues to the activity and thermal stability of ribonuclease Sa.

Authors:  Gennady I Yakovlev; Vladimir A Mitkevich; Kevin L Shaw; Saul Trevino; Stephanie Newsom; C Nick Pace; Alexander A Makarov
Journal:  Protein Sci       Date:  2003-10       Impact factor: 6.725

2.  Quantitative, directional measurement of electric field heterogeneity in the active site of ketosteroid isomerase.

Authors:  Aaron T Fafarman; Paul A Sigala; Jason P Schwans; Timothy D Fenn; Daniel Herschlag; Steven G Boxer
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-17       Impact factor: 11.205

3.  Dipoles localized at helix termini of proteins stabilize charges.

Authors:  J Aqvist; H Luecke; F A Quiocho; A Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  1991-03-01       Impact factor: 11.205

4.  Aborted double bicycle-pedal isomerization with hydrogen bond breaking is the primary event of bacteriorhodopsin proton pumping.

Authors:  Piero Altoè; Alessandro Cembran; Massimo Olivucci; Marco Garavelli
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-03       Impact factor: 11.205

5.  Structure and catalysis of acylaminoacyl peptidase: closed and open subunits of a dimer oligopeptidase.

Authors:  Veronika Harmat; Klarissza Domokos; Dóra K Menyhárd; Anna Palló; Zoltán Szeltner; Ilona Szamosi; Tamás Beke-Somfai; Gábor Náray-Szabó; László Polgár
Journal:  J Biol Chem       Date:  2010-11-16       Impact factor: 5.157

6.  Electrostatic fields in the active sites of lysozymes.

Authors:  D P Sun; D I Liao; S J Remington
Journal:  Proc Natl Acad Sci U S A       Date:  1989-07       Impact factor: 11.205

7.  Frustration in protein-DNA binding influences conformational switching and target search kinetics.

Authors:  Amir Marcovitz; Yaakov Levy
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-14       Impact factor: 11.205

8.  Drug resistance in HIV-1 protease: Flexibility-assisted mechanism of compensatory mutations.

Authors:  Stefano Piana; Paolo Carloni; Ursula Rothlisberger
Journal:  Protein Sci       Date:  2002-10       Impact factor: 6.725

9.  Chemical Control in the Battle against Fidelity in Promiscuous Natural Product Biosynthesis: The Case of Trichodiene Synthase.

Authors:  Mudit Dixit; Michal Weitman; Jiali Gao; Dan T Major
Journal:  ACS Catal       Date:  2016-12-02       Impact factor: 13.084

Review 10.  Computer aided enzyme design and catalytic concepts.

Authors:  Maria P Frushicheva; Matthew J L Mills; Patrick Schopf; Manoj K Singh; Ram B Prasad; Arieh Warshel
Journal:  Curr Opin Chem Biol       Date:  2014-05-08       Impact factor: 8.822

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