Literature DB >> 8973196

Retinal analog study of the role of steric interactions in the excited state isomerization dynamics of rhodopsin.

G G Kochendoerfer1, P J Verdegem, I van der Hoef, J Lugtenburg, R A Mathies.   

Abstract

The role of intramolecular steric interactions in the isomerization of the 11-cis-retinal chromophore in the photoreceptor protein rhodopsin is examined with resonance Raman and CD spectroscopy combined with quantum yield experiments. The resonance Raman spectra and CD spectra of 13-demethylrhodopsin indicate that its chromophore, an analog in which the nonbonded interaction between the 10-H and the 13-CH3 groups is removed, is less distorted in the C10...C13 region than the native chromophore. The reduced torsional and hydrogen-out-of-plane resonance Raman intensities further indicate that the excited state potential energy surface has a much shallower slope along the isomerization coordinate. This is consistent with the decrease in quantum yield from 0.67 in rhodopsin to 0.47 in 13-demethylrhodopsin. The resonance Raman intensities show that the steric twist is reintroduced by addition of a methyl group at the C10 position. However, the quantum yield of 10-methyl-13-demethylrhodopsin is found to be only 0.35. This is attributed to nonisomorphous protein-analog interactions. The nonbonded interaction between the 10-hydrogen and the 13-methyl group in 11-cis-retinal makes this isomer particularly effective as the light-sensing chromophore in all visual pigments.

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Year:  1996        PMID: 8973196     DOI: 10.1021/bi961951l

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  18 in total

1.  Determination of a molecular torsional angle in the metarhodopsin-I photointermediate of rhodopsin by double-quantum solid-state NMR.

Authors:  X Feng; P J Verdegem; M Edén; D Sandström; Y K Lee; P H Bovee-Geurts; W J de Grip; J Lugtenburg; H J de Groot; M H Levitt
Journal:  J Biomol NMR       Date:  2000-01       Impact factor: 2.835

2.  Wavelength dependent cis-trans isomerization in vision.

Authors:  J E Kim; M J Tauber; R A Mathies
Journal:  Biochemistry       Date:  2001-11-20       Impact factor: 3.162

3.  Resonance Raman Structural Evidence that the Cis-to-Trans Isomerization in Rhodopsin Occurs in Femtoseconds.

Authors:  J E Kim; D W McCamant; L Zhu; R A Mathies
Journal:  J Phys Chem B       Date:  2001-02-15       Impact factor: 2.991

4.  Strain relief at the active site of phosphoserine aminotransferase induced by radiation damage.

Authors:  Anatoly P Dubnovitsky; Raimond B G Ravelli; Alexander N Popov; Anastassios C Papageorgiou
Journal:  Protein Sci       Date:  2005-05-09       Impact factor: 6.725

Review 5.  Solid-state 2H NMR spectroscopy of retinal proteins in aligned membranes.

Authors:  Michael F Brown; Maarten P Heyn; Constantin Job; Suhkmann Kim; Stephan Moltke; Koji Nakanishi; Alexander A Nevzorov; Andrey V Struts; Gilmar F J Salgado; Ingrid Wallat
Journal:  Biochim Biophys Acta       Date:  2007-10-23

Review 6.  Microbial and animal rhodopsins: structures, functions, and molecular mechanisms.

Authors:  Oliver P Ernst; David T Lodowski; Marcus Elstner; Peter Hegemann; Leonid S Brown; Hideki Kandori
Journal:  Chem Rev       Date:  2013-12-23       Impact factor: 60.622

7.  Thermal properties of rhodopsin: insight into the molecular mechanism of dim-light vision.

Authors:  Jian Liu; Monica Yun Liu; Jennifer B Nguyen; Aditi Bhagat; Victoria Mooney; Elsa C Y Yan
Journal:  J Biol Chem       Date:  2011-06-09       Impact factor: 5.157

8.  Uncovering the triggers for GPCR activation using solid-state NMR spectroscopy.

Authors:  Naoki Kimata; Philip J Reeves; Steven O Smith
Journal:  J Magn Reson       Date:  2015-04       Impact factor: 2.229

9.  Light activation of rhodopsin: insights from molecular dynamics simulations guided by solid-state NMR distance restraints.

Authors:  Viktor Hornak; Shivani Ahuja; Markus Eilers; Joseph A Goncalves; Mordechai Sheves; Philip J Reeves; Steven O Smith
Journal:  J Mol Biol       Date:  2009-12-11       Impact factor: 5.469

Review 10.  Retinal dynamics during light activation of rhodopsin revealed by solid-state NMR spectroscopy.

Authors:  Michael F Brown; Gilmar F J Salgado; Andrey V Struts
Journal:  Biochim Biophys Acta       Date:  2009-08-28
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