Literature DB >> 11942852

Reaction path analysis of the "tunable" photoisomerization selectivity of free and locked retinal chromophores.

Luca De Vico1, Christopher S Page, Marco Garavelli, Fernando Bernardi, Riccardo Basosi, Massimo Olivucci.   

Abstract

Multiconfigurational second-order perturbation theory computations and reaction path mapping for the retinal protonated Schiff base models all-trans-nona-2,4,6,8-tetraeniminium and 2-cis-nona-2,4,6,8-tetraeniminium cation demonstrate that, in isolated conditions, retinal chromophores exhibit at least three competing excited-state double bond isomerization paths. These paths are associated with the photoisomerization of the double bonds in positions 9, 11, and 13, respectively, and are controlled by barriers that favor the position 11. The computations provide a basis for the understanding of the observed excited-state lifetime in both naturally occurring and synthetic chromophores in solution and, tentatively, in the protein environment. In particular, we provide a rationalization of the excited-state lifetimes observed for a group of locked retinal chromophores which suggests that photoisomerization in bacteriorhodopsin is the result of simultaneous specific "catalysis" (all-trans --> 13-cis path) accompanied by specific "inhibition" (all-trans --> 11-cis path). The nature of the S(1) --> S(0) decay channel associated with the three paths has also been investigated at the CASSCF level of theory. It is shown that the energy surfaces in the vicinity of the conical intersection for the photoisomerization about the central double bond of retinal (position 11) and the two corresponding lateral double bonds (positions 9 and 13) are structurally different.

Entities:  

Mesh:

Substances:

Year:  2002        PMID: 11942852     DOI: 10.1021/ja017502c

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  5 in total

1.  Ultrafast excited state dynamics of the protonated Schiff base of all-trans retinal in solvents.

Authors:  Goran Zgrablić; Kislon Voïtchovsky; Maik Kindermann; Stefan Haacke; Majed Chergui
Journal:  Biophys J       Date:  2005-04       Impact factor: 4.033

2.  First steps of retinal photoisomerization in proteorhodopsin.

Authors:  Martin O Lenz; Robert Huber; Bernhard Schmidt; Peter Gilch; Rolf Kalmbach; Martin Engelhard; Josef Wachtveitl
Journal:  Biophys J       Date:  2006-04-07       Impact factor: 4.033

3.  Molecular dynamics simulation of bacteriorhodopsin's photoisomerization using ab initio forces for the excited chromophore.

Authors:  Shigehiko Hayashi; Emad Tajkhorshid; Klaus Schulten
Journal:  Biophys J       Date:  2003-09       Impact factor: 4.033

4.  Two-State, Three-Mode Parametrization of the Force Field of a Retinal Chromophore Model.

Authors:  Emanuele Marsili; Marwa H Farag; Xuchun Yang; Luca De Vico; Massimo Olivucci
Journal:  J Phys Chem A       Date:  2019-02-26       Impact factor: 2.781

5.  The retinal chromophore/chloride ion pair: structure of the photoisomerization path and interplay of charge transfer and covalent states.

Authors:  Alessandro Cembran; Fernando Bernardi; Massimo Olivucci; Marco Garavelli
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-26       Impact factor: 11.205

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.