Literature DB >> 16603495

First steps of retinal photoisomerization in proteorhodopsin.

Martin O Lenz1, Robert Huber, Bernhard Schmidt, Peter Gilch, Rolf Kalmbach, Martin Engelhard, Josef Wachtveitl.   

Abstract

The early steps (<1 ns) in the photocycle of the detergent solubilized proton pump proteorhodopsin are analyzed by ultrafast spectroscopic techniques. A comparison to the first primary events in reconstituted proteorhodopsin as well as to the well known archaeal proton pump bacteriorhodopsin is given. A dynamic Stokes shift observed in fs-time-resolved fluorescence experiments allows a direct observation of early motions on the excited state potential energy surface. The initial dynamics is dominated by sequentially emerging stretching (<150 fs) and torsional (approximately 300 fs) modes of the retinal. The different protonation states of the primary proton acceptor Asp-97 drastically affect the reaction rate and the overall quantum efficiencies of the isomerization reactions, mainly evidenced for time scales above 1 ps. However, no major influence on the fast time scales (approximately 150 fs) could be seen, indicating that the movement out of the Franck-Condon region is fairly robust to electrostatic changes in the retinal binding pocket. Based on fs-time-resolved absorption and fluorescence spectra, ground and exited state contributions can be disentangled and allow to construct a reaction model that consistently explains pH-dependent effects in solubilized and reconstituted proteorhodopsin.

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Year:  2006        PMID: 16603495      PMCID: PMC1479053          DOI: 10.1529/biophysj.105.074690

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  33 in total

1.  Proteorhodopsin phototrophy in the ocean.

Authors:  O Béjà; E N Spudich; J L Spudich; M Leclerc; E F DeLong
Journal:  Nature       Date:  2001-06-14       Impact factor: 49.962

2.  Reaction path analysis of the "tunable" photoisomerization selectivity of free and locked retinal chromophores.

Authors:  Luca De Vico; Christopher S Page; Marco Garavelli; Fernando Bernardi; Riccardo Basosi; Massimo Olivucci
Journal:  J Am Chem Soc       Date:  2002-04-17       Impact factor: 15.419

3.  Femtosecond infrared spectroscopy of bacteriorhodopsin chromophore isomerization.

Authors:  Johannes Herbst; Karsten Heyne; Rolf Diller
Journal:  Science       Date:  2002-08-02       Impact factor: 47.728

4.  Proton transport by proteorhodopsin requires that the retinal Schiff base counterion Asp-97 be anionic.

Authors:  Andrei K Dioumaev; Jennifer M Wang; Zoltán Bálint; György Váró; Janos K Lanyi
Journal:  Biochemistry       Date:  2003-06-03       Impact factor: 3.162

5.  Excited-state dynamics of bacteriorhodopsin probed by broadband femtosecond fluorescence spectroscopy.

Authors:  B Schmidt; C Sobotta; B Heinz; S Laimgruber; M Braun; P Gilch
Journal:  Biochim Biophys Acta       Date:  2005-01-07

6.  Counterion controlled photoisomerization of retinal chromophore models: a computational investigation.

Authors:  Alessandro Cembran; Fernando Bernardi; Massimo Olivucci; Marco Garavelli
Journal:  J Am Chem Soc       Date:  2004-12-15       Impact factor: 15.419

7.  Computational evidence in favor of a two-state, two-mode model of the retinal chromophore photoisomerization.

Authors:  R González-Luque; M Garavelli; F Bernardi; M Merchán; M A Robb; M Olivucci
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-15       Impact factor: 11.205

8.  Glutamic acid 204 is the terminal proton release group at the extracellular surface of bacteriorhodopsin.

Authors:  L S Brown; J Sasaki; H Kandori; A Maeda; R Needleman; J K Lanyi
Journal:  J Biol Chem       Date:  1995-11-10       Impact factor: 5.157

9.  Primary reactions of sensory rhodopsins.

Authors:  I Lutz; A Sieg; A A Wegener; M Engelhard; I Boche; M Otsuka; D Oesterhelt; J Wachtveitl; W Zinth
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-16       Impact factor: 11.205

10.  Detection of fast light-activated H+ release and M intermediate formation from proteorhodopsin.

Authors:  Richard A Krebs; Ulrike Alexiev; Ranga Partha; Anne Marie DeVita; Mark S Braiman
Journal:  BMC Physiol       Date:  2002-04-09
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  14 in total

1.  Aspartate-histidine interaction in the retinal schiff base counterion of the light-driven proton pump of Exiguobacterium sibiricum.

Authors:  S P Balashov; L E Petrovskaya; E P Lukashev; E S Imasheva; A K Dioumaev; J M Wang; S V Sychev; D A Dolgikh; A B Rubin; M P Kirpichnikov; J K Lanyi
Journal:  Biochemistry       Date:  2012-07-10       Impact factor: 3.162

2.  Characterisation of Schiff base and chromophore in green proteorhodopsin by solid-state NMR.

Authors:  Nicole Pfleger; Mark Lorch; Andreas C Woerner; Sarika Shastri; Clemens Glaubitz
Journal:  J Biomol NMR       Date:  2007-10-30       Impact factor: 2.835

3.  Initial reaction dynamics of proteorhodopsin observed by femtosecond infrared and visible spectroscopy.

Authors:  Karsten Neumann; Mirka-Kristin Verhoefen; Ingrid Weber; Clemens Glaubitz; Josef Wachtveitl
Journal:  Biophys J       Date:  2008-03-07       Impact factor: 4.033

4.  Characterization of the primary photochemistry of proteorhodopsin with femtosecond spectroscopy.

Authors:  Alisa Rupenyan; Ivo H M van Stokkum; Jos C Arents; Rienk van Grondelle; Klaas Hellingwerf; Marie Louise Groot
Journal:  Biophys J       Date:  2008-01-30       Impact factor: 4.033

5.  The EF loop in green proteorhodopsin affects conformation and photocycle dynamics.

Authors:  Michaela Mehler; Frank Scholz; Sandra J Ullrich; Jiafei Mao; Markus Braun; Lynda J Brown; Richard C D Brown; Sarah A Fiedler; Johanna Becker-Baldus; Josef Wachtveitl; Clemens Glaubitz
Journal:  Biophys J       Date:  2013-07-16       Impact factor: 4.033

6.  Functionally Active Membrane Proteins Incorporated in Mesostructured Silica Films.

Authors:  Justin P Jahnke; Matthew N Idso; Sunyia Hussain; Matthias J N Junk; Julia M Fisher; David D Phan; Songi Han; Bradley F Chmelka
Journal:  J Am Chem Soc       Date:  2018-03-13       Impact factor: 15.419

7.  Lipid bilayer composition can influence the orientation of proteorhodopsin in artificial membranes.

Authors:  Ramya Tunuguntla; Mangesh Bangar; Kyunghoon Kim; Pieter Stroeve; Caroline M Ajo-Franklin; Aleksandr Noy
Journal:  Biophys J       Date:  2013-09-17       Impact factor: 4.033

Review 8.  Fluorescence spectroscopy of rhodopsins: insights and approaches.

Authors:  Ulrike Alexiev; David L Farrens
Journal:  Biochim Biophys Acta       Date:  2013-10-29

9.  Optical recording of action potentials in mammalian neurons using a microbial rhodopsin.

Authors:  Joel M Kralj; Adam D Douglass; Daniel R Hochbaum; Dougal Maclaurin; Adam E Cohen
Journal:  Nat Methods       Date:  2011-11-27       Impact factor: 28.547

10.  Strong pH-Dependent Near-Infrared Fluorescence in a Microbial Rhodopsin Reconstituted with a Red-Shifting Retinal Analogue.

Authors:  Yusaku Hontani; Srividya Ganapathy; Sean Frehan; Miroslav Kloz; Willem J de Grip; John T M Kennis
Journal:  J Phys Chem Lett       Date:  2018-11-01       Impact factor: 6.475

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