Literature DB >> 31545053

Multistate Multiconfiguration Quantum Chemical Computation of the Two-Photon Absorption Spectra of Bovine Rhodopsin.

Samira Gholami1, Laura Pedraza-González2, Xuchun Yang1, Alexander A Granovsky3, Ilya N Ioffe4, Massimo Olivucci1,2.   

Abstract

Recently, progress in IR sources has led to the discovery that humans can detect infrared (IR) light. This is hypothesized to be due to the two-photon absorption (TPA) events promoting the retina dim-light rod photoreceptor rhodopsin to the same excited state populated via one-photon absorption (OPA). Here, we combine quantum mechanics/molecular mechanics and extended multiconfiguration quasi-degenerate perturbation theory calculations to simulate the TPA spectrum of bovine rhodopsin (Rh) as a model for the human photoreceptor. The results show that the TPA spectrum of Rh has an intense S0 → S1 band but shows also S0 → S2 and S0 → S3 transitions whose intensities, relative to the S0 → S1 band, are significantly increased when compared to the corresponding bands of the OPA spectrum. In conclusion, we show that IR light in the 950 nm region can be perceived by rod photoreceptors, thus supporting the two-photon origin of the IR perception. We also found that the same photoreceptor can perceive red (i.e., close to 680 nm) light provided that TPA induces population of S2.

Entities:  

Year:  2019        PMID: 31545053      PMCID: PMC7141604          DOI: 10.1021/acs.jpclett.9b02291

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  43 in total

1.  Two-photon absorption strength: a new tool for the quantification of two-photon absorption.

Authors:  Rémy Fortrie; Henry Chermette
Journal:  J Chem Phys       Date:  2006-05-28       Impact factor: 3.488

2.  S1 and S2 excited States of gas-phase Schiff-base retinal chromophores.

Authors:  I B Nielsen; L Lammich; L H Andersen
Journal:  Phys Rev Lett       Date:  2006-01-04       Impact factor: 9.161

3.  In-depth activation of channelrhodopsin 2-sensitized excitable cells with high spatial resolution using two-photon excitation with a near-infrared laser microbeam.

Authors:  Samarendra K Mohanty; Rainer K Reinscheid; Xiaobin Liu; Naoe Okamura; Tatiana B Krasieva; Michael W Berns
Journal:  Biophys J       Date:  2008-07-11       Impact factor: 4.033

4.  Fluorescence Enhancement of a Microbial Rhodopsin via Electronic Reprogramming.

Authors:  María Del Carmen Marín; Damianos Agathangelou; Yoelvis Orozco-Gonzalez; Alessio Valentini; Yoshitaka Kato; Rei Abe-Yoshizumi; Hideki Kandori; Ahreum Choi; Kwang-Hwan Jung; Stefan Haacke; Massimo Olivucci
Journal:  J Am Chem Soc       Date:  2018-12-28       Impact factor: 15.419

5.  Spectrophotometric quantitation of rhodopsin in the human retina.

Authors:  F J van Kuijk; J W Lewis; P Buck; K R Parker; D S Kliger
Journal:  Invest Ophthalmol Vis Sci       Date:  1991-06       Impact factor: 4.799

6.  Ultraviolet chromophore transitions in the rhodopsin spectrum.

Authors:  T G Ebrey; B Honig
Journal:  Proc Natl Acad Sci U S A       Date:  1972-07       Impact factor: 11.205

7.  Discrete Solvent Reaction Field Calculations for One- and Two-Photon Absorptions of Solution-Phase Dimethylaminonitrostilbene Molecule.

Authors:  Shih-I Lu
Journal:  J Phys Chem A       Date:  2019-06-17       Impact factor: 2.781

8.  a-ARM: Automatic Rhodopsin Modeling with Chromophore Cavity Generation, Ionization State Selection, and External Counterion Placement.

Authors:  Laura Pedraza-González; Luca De Vico; Marı A Del Carmen Marı N; Francesca Fanelli; Massimo Olivucci
Journal:  J Chem Theory Comput       Date:  2019-04-12       Impact factor: 6.006

9.  Theoretical study of the two-photon absorption properties of several asymmetrically substituted stilbenoid molecules.

Authors:  Koji Ohta; Liudmil Antonov; Satoru Yamada; Kenji Kamada
Journal:  J Chem Phys       Date:  2007-08-28       Impact factor: 3.488

10.  The UV-visible action-absorption spectrum of all-trans and 11-cis protonated Schiff base retinal in the gas phase.

Authors:  Jeppe Langeland Knudsen; Anika Kluge; Anastasia V Bochenkova; Hjalte V Kiefer; Lars H Andersen
Journal:  Phys Chem Chem Phys       Date:  2018-03-07       Impact factor: 3.676

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  5 in total

1.  Two-photon microperimetry with picosecond pulses.

Authors:  Marcin J Marzejon; Łukasz Kornaszewski; Jakub Bogusławski; Piotr Ciąćka; Miłosz Martynow; Grażyna Palczewska; Sebastian Maćkowski; Krzysztof Palczewski; Maciej Wojtkowski; Katarzyna Komar
Journal:  Biomed Opt Express       Date:  2020-12-17       Impact factor: 3.732

2.  Web-ARM: A Web-Based Interface for the Automatic Construction of QM/MM Models of Rhodopsins.

Authors:  Laura Pedraza-González; María Del Carmen Marín; Alejandro N Jorge; Tyler D Ruck; Xuchun Yang; Alessio Valentini; Massimo Olivucci; Luca De Vico
Journal:  J Chem Inf Model       Date:  2020-02-10       Impact factor: 4.956

3.  Pro219 is an electrostatic color determinant in the light-driven sodium pump KR2.

Authors:  Yuta Nakajima; Laura Pedraza-González; Leonardo Barneschi; Keiichi Inoue; Massimo Olivucci; Hideki Kandori
Journal:  Commun Biol       Date:  2021-10-13

4.  E/Z Molecular Photoswitches Activated by Two-Photon Absorption: Comparison between Different Families.

Authors:  Marco Marazzi; Cristina García-Iriepa; Carlos Benitez-Martin; Francisco Najera; Antonio Monari; Diego Sampedro
Journal:  Molecules       Date:  2021-12-05       Impact factor: 4.411

Review 5.  Evolution of the Automatic Rhodopsin Modeling (ARM) Protocol.

Authors:  Laura Pedraza-González; Luca De Vico; Massimo Olivucci; Leonardo Barneschi; Daniele Padula
Journal:  Top Curr Chem (Cham)       Date:  2022-03-15
  5 in total

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