Literature DB >> 15839683

CO rebinding to protoheme: investigations of the proximal and distal contributions to the geminate rebinding barrier.

Xiong Ye1, Anchi Yu, Georgi Y Georgiev, Florin Gruia, Dan Ionascu, Wenxiang Cao, J Timothy Sage, Paul M Champion.   

Abstract

The rebinding kinetics of CO to protoheme (FePPIX) in the presence and absence of a proximal imidazole ligand reveals the magnitude of the rebinding barrier associated with proximal histidine ligation. The ligation states of the heme under different solvent conditions are also investigated using both equilibrium and transient spectroscopy. In the absence of imidazole, a weak ligand (probably water) is bound on the proximal side of the FePPIX-CO adduct. When the heme is encapsulated in micelles of cetyltrimethylammonium bromide (CTAB), photolysis of FePPIX-CO induces a complicated set of proximal ligation changes. In contrast, the use of glycerol-water solutions leads to a simple two-state geminate kinetic response with rapid (10-100 ps) CO recombination and a geminate amplitude that can be controlled by adjusting the solvent viscosity. By comparing the rate of CO rebinding to protoheme in glycerol solution with and without a bound proximal imidazole ligand, we find the enthalpic contribution to the proximal rebinding barrier, H(p), to be 11 +/- 2 kJ/mol. Further comparison of the CO rebinding rate of the imidazole bound protoheme with the analogous rate in myoglobin (Mb) leads to a determination of the difference in their distal free energy barriers: DeltaG(D) approximately 12 +/- 1 kJ/mol. Estimates of the entropic contributions, due to the ligand accessible volumes in the distal pocket and the xenon-4 cavity of myoglobin ( approximately 3 kJ/mol), then lead to a distal pocket enthalpic barrier of H(D) approximately 9 +/- 2 kJ/mol. These results agree well with the predictions of a simple model and with previous independent room-temperature measurements of the enthalpic MbCO rebinding barrier (18 +/- 2 kJ/mol).

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Year:  2005        PMID: 15839683      PMCID: PMC2768272          DOI: 10.1021/ja042365f

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  52 in total

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7.  Mapping the pathways for O2 entry into and exit from myoglobin.

Authors:  E E Scott; Q H Gibson; J S Olson
Journal:  J Biol Chem       Date:  2000-10-03       Impact factor: 5.157

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Journal:  Biochemistry       Date:  1986-05-20       Impact factor: 3.162

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Journal:  Biochemistry       Date:  1994-03-01       Impact factor: 3.162

10.  Spectroscopic studies of myoglobin at low pH: heme structure and ligation.

Authors:  J T Sage; D Morikis; P M Champion
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  16 in total

1.  Temperature-dependent studies of NO recombination to heme and heme proteins.

Authors:  Dan Ionascu; Flaviu Gruia; Xiong Ye; Anchi Yu; Florin Rosca; Chris Beck; Andrey Demidov; John S Olson; Paul M Champion
Journal:  J Am Chem Soc       Date:  2005-12-07       Impact factor: 15.419

2.  Low frequency spectral density of ferrous heme: perturbations induced by axial ligation and protein insertion.

Authors:  Flaviu Gruia; Xiong Ye; Dan Ionascu; Minoru Kubo; Paul M Champion
Journal:  Biophys J       Date:  2007-08-31       Impact factor: 4.033

3.  Temperature-dependent heme kinetics with nonexponential binding and barrier relaxation in the absence of protein conformational substates.

Authors:  Xiong Ye; Dan Ionascu; Florin Gruia; Anchi Yu; Abdelkrim Benabbas; Paul M Champion
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-05       Impact factor: 11.205

4.  Investigations of heme ligation and ligand switching in cytochromes p450 and p420.

Authors:  Yuhan Sun; Weiqiao Zeng; Abdelkrim Benabbas; Xin Ye; Ilia Denisov; Stephen G Sligar; Jing Du; John H Dawson; Paul M Champion
Journal:  Biochemistry       Date:  2013-08-14       Impact factor: 3.162

5.  Investigations of low-frequency vibrational dynamics and ligand binding kinetics of cystathionine beta-synthase.

Authors:  Venugopal Karunakaran; Abdelkrim Benabbas; Yuhan Sun; Zhenyu Zhang; Sangita Singh; Ruma Banerjee; Paul M Champion
Journal:  J Phys Chem B       Date:  2010-03-11       Impact factor: 2.991

6.  Quaternary structure controls ligand dynamics in soluble guanylate cyclase.

Authors:  Byung-Kuk Yoo; Isabelle Lamarre; Jean-Louis Martin; Michel Negrerie
Journal:  J Biol Chem       Date:  2012-01-04       Impact factor: 5.157

7.  Dynamics of nitric oxide rebinding and escape in horseradish peroxidase.

Authors:  Xiong Ye; Anchi Yu; Paul M Champion
Journal:  J Am Chem Soc       Date:  2006-02-08       Impact factor: 15.419

8.  Investigations of vibrational coherence in the low-frequency region of ferric heme proteins.

Authors:  Flaviu Gruia; Minoru Kubo; Xiong Ye; Paul M Champion
Journal:  Biophys J       Date:  2007-12-07       Impact factor: 4.033

9.  Probing the role of hydration in the unfolding transitions of carbonmonoxy myoglobin and apomyoglobin.

Authors:  Lin Guo; Jaeheung Park; Taegon Lee; Pramit Chowdhury; Manho Lim; Feng Gai
Journal:  J Phys Chem B       Date:  2009-04-30       Impact factor: 2.991

10.  Measurements of heme relaxation and ligand recombination in strong magnetic fields.

Authors:  Zhenyu Zhang; Abdelkrim Benabbas; Xiong Ye; Anchi Yu; Paul M Champion
Journal:  J Phys Chem B       Date:  2009-08-06       Impact factor: 2.991

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