Literature DB >> 16448103

Dynamics of nitric oxide rebinding and escape in horseradish peroxidase.

Xiong Ye1, Anchi Yu, Paul M Champion.   

Abstract

Ultrafast kinetic measurements of NO rebinding to horseradish peroxidase (HRP) are reported for the first time. The geminate kinetics are found to be exponential for all HRP samples studied. The ferric forms of HRP have NO geminate recombination time constants in the range of 15-30 ps, while the ferrous form has a time constant of approximately 7 ps. The simple exponential NO geminate kinetics found for HRP demonstrate that heme relaxation is not the underlying source of the nonexponential NO rebinding in myoglobin (Mb). The NO ligand escape rates from HRP are also determined, and they are found to depend dramatically on the presence or absence of the competitive inhibitor benzohydroxamic acid (BHA). The kinetic results indicate that, in contrast to Mb, there is direct solvent access to the distal heme pocket of HRP.

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Year:  2006        PMID: 16448103      PMCID: PMC2768277          DOI: 10.1021/ja057172m

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  21 in total

1.  Conformational interconversion in protein crystals.

Authors:  L Zhu; J T Sage; A A Rigos; D Morikis; P M Champion
Journal:  J Mol Biol       Date:  1992-03-05       Impact factor: 5.469

2.  Ligand binding and protein relaxation in heme proteins: a room temperature analysis of NO geminate recombination.

Authors:  J W Petrich; J C Lambry; K Kuczera; M Karplus; C Poyart; J L Martin
Journal:  Biochemistry       Date:  1991-04-23       Impact factor: 3.162

3.  Probing heme protein conformational equilibration rates with kinetic selection.

Authors:  W D Tian; J T Sage; P M Champion; E Chien; S G Sligar
Journal:  Biochemistry       Date:  1996-03-19       Impact factor: 3.162

4.  Resonance raman investigations of site-directed mutants of myoglobin: effects of distal histidine replacement.

Authors:  D Morikis; P M Champion; B A Springer; S G Sligar
Journal:  Biochemistry       Date:  1989-05-30       Impact factor: 3.162

5.  Recombination of carbon monoxide to ferrous horseradish peroxidase types A and C.

Authors:  W Doster; S F Bowne; H Frauenfelder; L Reinisch; E Shyamsunder
Journal:  J Mol Biol       Date:  1987-03-20       Impact factor: 5.469

6.  pH dependence of carbon monoxide binding to ferrous horseradish peroxidase.

Authors:  M Coletta; F Ascoli; M Brunori; T G Traylor
Journal:  J Biol Chem       Date:  1986-07-25       Impact factor: 5.157

7.  Mapping the pathways for O2 entry into and exit from myoglobin.

Authors:  E E Scott; Q H Gibson; J S Olson
Journal:  J Biol Chem       Date:  2000-10-03       Impact factor: 5.157

8.  Infrared spectroscopy of photodissociated carboxymyoglobin at low temperatures.

Authors:  J O Alben; D Beece; S F Bowne; W Doster; L Eisenstein; H Frauenfelder; D Good; J D McDonald; M C Marden; P P Moh; L Reinisch; A H Reynolds; E Shyamsunder; K T Yue
Journal:  Proc Natl Acad Sci U S A       Date:  1982-06       Impact factor: 11.205

9.  Accessibility of oxygen with respect to the heme pocket in horseradish peroxidase.

Authors:  Mazdak Khajehpour; Ivo Rietveld; Sergei Vinogradov; Ninad V Prabhu; Kim A Sharp; Jane M Vanderkooi
Journal:  Proteins       Date:  2003-11-15

Review 10.  Horseradish peroxidase: a modern view of a classic enzyme.

Authors:  Nigel C Veitch
Journal:  Phytochemistry       Date:  2004-02       Impact factor: 4.072

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  9 in total

1.  Ultrafast ligand dynamics in the heme-based GAF sensor domains of the histidine kinases DosS and DosT from Mycobacterium tuberculosis.

Authors:  Marten H Vos; Latifa Bouzhir-Sima; Jean-Christophe Lambry; Hao Luo; Julian J Eaton-Rye; Alexandra Ioanoviciu; Paul R Ortiz de Montellano; Ursula Liebl
Journal:  Biochemistry       Date:  2011-12-09       Impact factor: 3.162

2.  Coherence spectroscopy investigations of the low-frequency vibrations of heme: effects of protein-specific perturbations.

Authors:  Flaviu Gruia; Minoru Kubo; Xiong Ye; Dan Ionascu; Changyuan Lu; Robert K Poole; Syun-Ru Yeh; Paul M Champion
Journal:  J Am Chem Soc       Date:  2008-03-20       Impact factor: 15.419

3.  Reactions of HNO with heme proteins: new routes to HNO-heme complexes and insight into physiological effects.

Authors:  Murugaeson R Kumar; Jon M Fukuto; Katrina M Miranda; Patrick J Farmer
Journal:  Inorg Chem       Date:  2010-07-19       Impact factor: 5.165

4.  Ultrafast dynamics of diatomic ligand binding to nitrophorin 4.

Authors:  Abdelkrim Benabbas; Xiong Ye; Minoru Kubo; Zhenyu Zhang; Estelle M Maes; William R Montfort; Paul M Champion
Journal:  J Am Chem Soc       Date:  2010-03-03       Impact factor: 15.419

5.  Low-frequency dynamics of Caldariomyces fumago chloroperoxidase probed by femtosecond coherence spectroscopy.

Authors:  Flaviu Gruia; Dan Ionascu; Minoru Kubo; Xiong Ye; John Dawson; Robert L Osborne; S G Sligar; Ilia Denisov; Aditi Das; T L Poulos; James Terner; Paul M Champion
Journal:  Biochemistry       Date:  2008-04-12       Impact factor: 3.162

6.  Measurements of heme relaxation and ligand recombination in strong magnetic fields.

Authors:  Zhenyu Zhang; Abdelkrim Benabbas; Xiong Ye; Anchi Yu; Paul M Champion
Journal:  J Phys Chem B       Date:  2009-08-06       Impact factor: 2.991

7.  Ultrafast infrared spectroscopy reveals water-mediated coherent dynamics in an enzyme active site.

Authors:  Katrin Adamczyk; Niall Simpson; Gregory M Greetham; Andrea Gumiero; Martin A Walsh; Michael Towrie; Anthony W Parker; Neil T Hunt
Journal:  Chem Sci       Date:  2014-10-22       Impact factor: 9.825

8.  The interplay between mitochondrial reactive oxygen species formation and the coenzyme Q reduction level.

Authors:  Karolina Dominiak; Agnieszka Koziel; Wieslawa Jarmuszkiewicz
Journal:  Redox Biol       Date:  2018-07-23       Impact factor: 11.799

9.  Solvent Composition Drives the Rebinding Kinetics of Nitric Oxide to Microperoxidase.

Authors:  Padmabati Mondal; Markus Meuwly
Journal:  Sci Rep       Date:  2018-03-27       Impact factor: 4.379

  9 in total

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