Literature DB >> 23905516

Investigations of heme ligation and ligand switching in cytochromes p450 and p420.

Yuhan Sun1, Weiqiao Zeng, Abdelkrim Benabbas, Xin Ye, Ilia Denisov, Stephen G Sligar, Jing Du, John H Dawson, Paul M Champion.   

Abstract

It is generally accepted that the inactive P420 form of cytochrome P450 (CYP) involves the protonation of the native cysteine thiolate to form a neutral thiol heme ligand. On the other hand, it has also been suggested that recruitment of a histidine to replace the native cysteine thiolate ligand might underlie the P450 → P420 transition. Here, we discuss resonance Raman investigations of the H93G myoglobin (Mb) mutant in the presence of tetrahydrothiophene (THT) or cyclopentathiol (CPSH), and on pressure-induced cytochrome P420cam (CYP101), that show a histidine becomes the heme ligand upon CO binding. The Raman mode near 220 cm⁻¹, normally associated with the Fe-histidine vibration in heme proteins, is not observed in either reduced P420cam or the reduced H93G Mb samples, indicating that histidine is not the ligand in the reduced state. The absence of a mode near 220 cm⁻¹ is also inconsistent with a generalization of the suggestion that the 221 cm⁻¹ Raman mode, observed in the P420-CO photoproduct of inducible nitric oxide synthase (iNOS), arises from a thiol-bound ferrous heme. This leads us to assign the 218 cm⁻¹ mode observed in the 10 ns P420cam-CO photoproduct Raman spectrum to a Fe-histidine vibration, in analogy to many other histidine-bound heme systems. Additionally, the inverse correlation plots of the νFe-His and νCO frequencies for the CO adducts of P420cam and the H93G analogs provide supporting evidence that histidine is the heme ligand in the P420-CO-bound state. We conclude that, when CO binds to the ferrous P420 state, a histidine ligand is recruited as the heme ligand. The common existence of an HXC-Fe motif in many CYP systems allows the C → H ligand switch to occur with only minor conformational changes. One suggested conformation of P420-CO involves the addition of another turn in the proximal L helix so that, when the protonated Cys ligand is dissociated from the heme, it can become part of the helix, and the heme is ligated by the His residue from the adjoining loop region. In other systems, such as iNOS and CYP3A4 (where the HXC-Fe motif is not found), a somewhat larger conformational change would be necessary to recuit a nearby histidine.

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Year:  2013        PMID: 23905516      PMCID: PMC3777526          DOI: 10.1021/bi400541v

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  36 in total

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Journal:  J Am Chem Soc       Date:  1975-07-09       Impact factor: 15.419

2.  Effect of DNA binding on geminate CO recombination kinetics in CO-sensing transcription factor CooA.

Authors:  Abdelkrim Benabbas; Venugopal Karunakaran; Hwan Youn; Thomas L Poulos; Paul M Champion
Journal:  J Biol Chem       Date:  2012-04-28       Impact factor: 5.157

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Journal:  J Biol Chem       Date:  1974-12-10       Impact factor: 5.157

4.  A photolysis-triggered heme ligand switch in H93G myoglobin.

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Journal:  Biochemistry       Date:  2001-05-01       Impact factor: 3.162

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Journal:  J Mol Biol       Date:  1980-01-25       Impact factor: 5.469

6.  An infrared spectroscopic study of carbon monoxide bonding to ferrous cytochrome P-450.

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Journal:  Biochemistry       Date:  1978-12-26       Impact factor: 3.162

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Journal:  Science       Date:  1982-12-17       Impact factor: 47.728

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Journal:  Biochemistry       Date:  2004-08-31       Impact factor: 3.162

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Journal:  J Biol Chem       Date:  1982-07-25       Impact factor: 5.157

10.  Neutral thiol as a proximal ligand to ferrous heme iron: implications for heme proteins that lose cysteine thiolate ligation on reduction.

Authors:  Roshan Perera; Masanori Sono; Jeffrey A Sigman; Thomas D Pfister; Yi Lu; John H Dawson
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-24       Impact factor: 11.205

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  11 in total

1.  Endogenous insertion of non-native metalloporphyrins into human membrane cytochrome P450 enzymes.

Authors:  Rahul Yadav; Emily E Scott
Journal:  J Biol Chem       Date:  2018-09-14       Impact factor: 5.157

2.  On the occurrence of cytochrome P450 in viruses.

Authors:  David C Lamb; Alec H Follmer; Jared V Goldstone; David R Nelson; Andrew G Warrilow; Claire L Price; Marie Y True; Steven L Kelly; Thomas L Poulos; John J Stegeman
Journal:  Proc Natl Acad Sci U S A       Date:  2019-06-05       Impact factor: 11.205

Review 3.  Rapid kinetic methods to dissect steroidogenic cytochrome P450 reaction mechanisms.

Authors:  Francis K Yoshimoto; Richard J Auchus
Journal:  J Steroid Biochem Mol Biol       Date:  2015-10-22       Impact factor: 4.292

4.  Histidine-Lysine Axial Ligand Switching in a Hemoglobin: A Role for Heme Propionates.

Authors:  Dillon B Nye; Matthew R Preimesberger; Ananya Majumdar; Juliette T J Lecomte
Journal:  Biochemistry       Date:  2018-01-10       Impact factor: 3.162

5.  Mechanism-Guided Design and Discovery of Efficient Cytochrome P450-Derived C-H Amination Biocatalysts.

Authors:  Viktoria Steck; Joshua N Kolev; Xinkun Ren; Rudi Fasan
Journal:  J Am Chem Soc       Date:  2020-06-01       Impact factor: 15.419

6.  Redox-dependent Ligand Switching in a Sensory Heme-binding GAF Domain of the Cyanobacterium Nostoc sp. PCC7120.

Authors:  Kun Tang; Markus Knipp; Bing-Bing Liu; Nicholas Cox; Robert Stabel; Qi He; Ming Zhou; Hugo Scheer; Kai-Hong Zhao; Wolfgang Gärtner
Journal:  J Biol Chem       Date:  2015-06-10       Impact factor: 5.157

7.  Structural Insights on the Conversion of Cytochrome P450 to P420.

Authors:  Jessica A Gable; Sarvind Tripathi; Thomas L Poulos
Journal:  ACS Omega       Date:  2022-05-27

8.  Domain-Swap Dimerization of Acanthamoeba castellanii CYP51 and a Unique Mechanism of Inactivation by Isavuconazole.

Authors:  Vandna Sharma; Brian Shing; Lilian Hernandez-Alvarez; Anjan Debnath; Larissa M Podust
Journal:  Mol Pharmacol       Date:  2020-10-02       Impact factor: 4.436

9.  Spectroscopic evidence supporting neutral thiol ligation to ferrous heme iron.

Authors:  Masanori Sono; Shengfang Sun; Anuja Modi; Mark S Hargrove; Bastian Molitor; Nicole Frankenberg-Dinkel; John H Dawson
Journal:  J Biol Inorg Chem       Date:  2018-09-24       Impact factor: 3.358

10.  Structural Adaptability Facilitates Histidine Heme Ligation in a Cytochrome P450.

Authors:  John A McIntosh; Thomas Heel; Andrew R Buller; Linda Chio; Frances H Arnold
Journal:  J Am Chem Soc       Date:  2015-09-23       Impact factor: 15.419

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