Literature DB >> 17766351

Low frequency spectral density of ferrous heme: perturbations induced by axial ligation and protein insertion.

Flaviu Gruia1, Xiong Ye, Dan Ionascu, Minoru Kubo, Paul M Champion.   

Abstract

Femtosecond coherence spectroscopy is used to probe low frequency (20-400 cm(-1)) modes of the ferrous heme group in solution, with and without 2-methyl imidazole (2MeIm) as an axial ligand. The results are compared to heme proteins (CPO, P450(cam), HRP, Mb) where insertion of the heme into the protein results in redistribution of the low frequency spectral density and in (approximately 60%) longer damping times for the coherent signals. The major effect of imidazole ligation to the ferrous heme is the "softening" of the low frequency force constants by a factor of approximately 0.6 +/- 0.1. The functional consequences of imidazole ligation are assessed and it is found that the enthalpic CO rebinding barrier is increased significantly when imidazole is bound. The force constant softening analysis, combined with the kinetics results, indicates that the iron is displaced by only approximately 0.2 A from the heme plane in the absence of the imidazole ligand, whereas it is displaced by approximately 0.4 A when imidazole (histidine) is present. This suggests that binding of imidazole (histidine) as an axial ligand, and the concomitant softening of the force constants, leads to an anharmonic distortion of the heme group that has significant functional consequences.

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Year:  2007        PMID: 17766351      PMCID: PMC2098722          DOI: 10.1529/biophysj.107.114736

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  22 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-29       Impact factor: 11.205

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Journal:  Proc Natl Acad Sci U S A       Date:  1980-04       Impact factor: 11.205

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Journal:  J Mol Biol       Date:  1996-03-08       Impact factor: 5.469

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  12 in total

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2.  Coherence spectroscopy investigations of the low-frequency vibrations of heme: effects of protein-specific perturbations.

Authors:  Flaviu Gruia; Minoru Kubo; Xiong Ye; Dan Ionascu; Changyuan Lu; Robert K Poole; Syun-Ru Yeh; Paul M Champion
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3.  Peptide-Protein Binding Investigated by Far-IR Spectroscopy and Molecular Dynamics Simulations.

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4.  Single-molecule vibrational spectroscopy adds structural resolution to the optical trap.

Authors:  Ziad Ganim
Journal:  Biophys J       Date:  2013-01-08       Impact factor: 4.033

5.  Spectroscopic identification of reactive porphyrin motions.

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6.  Investigations of low-frequency vibrational dynamics and ligand binding kinetics of cystathionine beta-synthase.

Authors:  Venugopal Karunakaran; Abdelkrim Benabbas; Yuhan Sun; Zhenyu Zhang; Sangita Singh; Ruma Banerjee; Paul M Champion
Journal:  J Phys Chem B       Date:  2010-03-11       Impact factor: 2.991

7.  Investigation of the low frequency dynamics of heme proteins: native and mutant cytochrome P450(cam) and redox partner complexes.

Authors:  Venugopal Karunakaran; Ilia Denisov; Stephen G Sligar; Paul M Champion
Journal:  J Phys Chem B       Date:  2011-03-10       Impact factor: 2.991

8.  Investigations of the low-frequency spectral density of cytochrome c upon equilibrium unfolding.

Authors:  Yuhan Sun; Venugopal Karunakaran; Paul M Champion
Journal:  J Phys Chem B       Date:  2013-08-07       Impact factor: 2.991

9.  Investigations of vibrational coherence in the low-frequency region of ferric heme proteins.

Authors:  Flaviu Gruia; Minoru Kubo; Xiong Ye; Paul M Champion
Journal:  Biophys J       Date:  2007-12-07       Impact factor: 4.033

10.  Low-frequency dynamics of Caldariomyces fumago chloroperoxidase probed by femtosecond coherence spectroscopy.

Authors:  Flaviu Gruia; Dan Ionascu; Minoru Kubo; Xiong Ye; John Dawson; Robert L Osborne; S G Sligar; Ilia Denisov; Aditi Das; T L Poulos; James Terner; Paul M Champion
Journal:  Biochemistry       Date:  2008-04-12       Impact factor: 3.162

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