Literature DB >> 15756461

Addressing the overlap problem in the quantitative analysis of two dimensional NMR spectra: application to (15)N relaxation measurements.

Vitali Tugarinov1, Wing-Yiu Choy, Eriks Kupce, Lewis E Kay.   

Abstract

A quantitative analysis of 2D (1)H-(15)N spectra is often complicated by resonance overlap. Here a simple method is presented for resolving overlapped correlations by recording 2D projection planes from HNCO data sets. Applications are presented involving the measurement of (15)N T(1rho) relaxation rates in a high molecular weight protein, malate synthase G, and in a system that exchanges between folded and unfolded states, the drkN SH3 domain. By supplementing relaxation data recorded in the conventional way as a series of 2D (1)H-(15)N data sets with a series of a pair of projection planes the number of dynamics probes is increased significantly for both systems studied.

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Year:  2004        PMID: 15756461     DOI: 10.1007/s10858-005-1549-y

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  21 in total

1.  Four-dimensional NMR spectroscopy of a 723-residue protein: chemical shift assignments and secondary structure of malate synthase g.

Authors:  Vitali Tugarinov; Ranjith Muhandiram; Ayeda Ayed; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2002-08-28       Impact factor: 15.419

2.  Generalized reconstruction of n-D NMR spectra from multiple projections: application to the 5-D HACACONH spectrum of protein G B1 domain.

Authors:  Brian E Coggins; Ronald A Venters; Pei Zhou
Journal:  J Am Chem Soc       Date:  2004-02-04       Impact factor: 15.419

3.  GFT NMR experiments for polypeptide backbone and 13Cbeta chemical shift assignment.

Authors:  Seho Kim; Thomas Szyperski
Journal:  J Biomol NMR       Date:  2004-02       Impact factor: 2.835

4.  New methods for fast multidimensional NMR.

Authors:  Ray Freeman; Eriks Kupce
Journal:  J Biomol NMR       Date:  2003-10       Impact factor: 2.835

5.  Projection-reconstruction of three-dimensional NMR spectra.

Authors:  Eriks Kupce; Ray Freeman
Journal:  J Am Chem Soc       Date:  2003-11-19       Impact factor: 15.419

6.  Fast reconstruction of four-dimensional NMR spectra from plane projections.

Authors:  Eriks Kupce; Ray Freeman
Journal:  J Biomol NMR       Date:  2004-04       Impact factor: 2.835

7.  Triple-resonance NOESY-based experiments with improved spectral resolution: applications to structural characterization of unfolded, partially folded and folded proteins.

Authors:  O Zhang; J D Forman-Kay; D Shortle; L E Kay
Journal:  J Biomol NMR       Date:  1997-02       Impact factor: 2.835

8.  3D NMR experiments for measuring 15N relaxation data of large proteins: application to the 44 kDa ectodomain of SIV gp41.

Authors:  M Caffrey; J Kaufman; S J Stahl; P T Wingfield; A M Gronenborn; G M Clore
Journal:  J Magn Reson       Date:  1998-12       Impact factor: 2.229

9.  Amino acid type determination in the sequential assignment procedure of uniformly 13C/15N-enriched proteins.

Authors:  S Grzesiek; A Bax
Journal:  J Biomol NMR       Date:  1993-03       Impact factor: 2.835

10.  Characterization of thermotropic state changes in myosin subfragment-1 and heavy meromyosin by UV difference spectroscopy.

Authors:  U Kamath; J W Shriver
Journal:  J Biol Chem       Date:  1989-04-05       Impact factor: 5.157

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  7 in total

1.  Extracting protein dynamics information from overlapped NMR signals using relaxation dispersion difference NMR spectroscopy.

Authors:  Tsuyoshi Konuma; Erisa Harada; Kenji Sugase
Journal:  J Biomol NMR       Date:  2015-10-17       Impact factor: 2.835

2.  Projected [(1)H, (15)N]-HMQC-[ (1)H, (1)H]-NOESY for large molecular systems: application to a 121 kDa protein-DNA complex.

Authors:  Veniamin Galius; Chrysoula Leontiou; Timothy Richmond; Gerhard Wider
Journal:  J Biomol NMR       Date:  2008-01-30       Impact factor: 2.835

3.  Triple resonance ¹⁵Ν NMR relaxation experiments for studies of intrinsically disordered proteins.

Authors:  Pavel Srb; Jiří Nováček; Pavel Kadeřávek; Alžbeta Rabatinová; Libor Krásný; Jitka Žídková; Janette Bobálová; Vladimír Sklenář; Lukáš Žídek
Journal:  J Biomol NMR       Date:  2017-10-25       Impact factor: 2.835

4.  Optimized linear prediction for radial sampled multidimensional NMR experiments.

Authors:  John M Gledhill; Vignesh Kasinath; A Joshua Wand
Journal:  J Magn Reson       Date:  2011-06-28       Impact factor: 2.229

5.  Characterization of Internal Protein Dynamics and Conformational Entropy by NMR Relaxation.

Authors:  Matthew A Stetz; José A Caro; Sravya Kotaru; Xuejun Yao; Bryan S Marques; Kathleen G Valentine; A Joshua Wand
Journal:  Methods Enzymol       Date:  2018-12-08       Impact factor: 1.600

6.  15N H/D-SOLEXSY experiment for accurate measurement of amide solvent exchange rates: application to denatured drkN SH3.

Authors:  Veniamin Chevelkov; Yi Xue; D Krishna Rao; Julie D Forman-Kay; Nikolai R Skrynnikov
Journal:  J Biomol NMR       Date:  2010-02-27       Impact factor: 2.835

7.  Hadamard NMR spectroscopy for relaxation measurements of large (>35 kDa) proteins.

Authors:  B Tom Burnley; Arnout P Kalverda; Stephen J Paisey; Alan Berry; Steve W Homans
Journal:  J Biomol NMR       Date:  2007-09-20       Impact factor: 2.835

  7 in total

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