Literature DB >> 17882509

Hadamard NMR spectroscopy for relaxation measurements of large (>35 kDa) proteins.

B Tom Burnley1, Arnout P Kalverda, Stephen J Paisey, Alan Berry, Steve W Homans.   

Abstract

Here we present a suite of pulse sequences for the measurement of (15)N T(1), T(1rho) and NOE data that combine traditional TROSY-based pulse sequences with band-selective Hadamard frequency encoding. The additive nature of the Hadamard matrix produces much reduced resonance overlap without the need for an increase in the dimensionality of the experiment or a significant decrease in the signal to noise ratio. We validate the accuracy of these sequences in application to ubiquitin and demonstrate their utility for relaxation measurements in Escherichia coli Class II fructose 1,6-bisphosphate aldolase (FBP-aldolase), a 358 residue 78 kDa dimeric enzyme.

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Year:  2007        PMID: 17882509     DOI: 10.1007/s10858-007-9192-4

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  17 in total

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Authors:  Nozomi Nagano; Christine A Orengo; Janet M Thornton
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2.  Addressing the overlap problem in the quantitative analysis of two dimensional NMR spectra: application to (15)N relaxation measurements.

Authors:  Vitali Tugarinov; Wing-Yiu Choy; Eriks Kupce; Lewis E Kay
Journal:  J Biomol NMR       Date:  2004-11       Impact factor: 2.835

3.  The crystal structure of a class II fructose-1,6-bisphosphate aldolase shows a novel binuclear metal-binding active site embedded in a familiar fold.

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Review 4.  The structure and evolution of alpha/beta barrel proteins.

Authors:  D Reardon; G K Farber
Journal:  FASEB J       Date:  1995-04       Impact factor: 5.191

5.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

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Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

6.  Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution.

Authors:  K Pervushin; R Riek; G Wider; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

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Journal:  J Mol Biol       Date:  1996-12-20       Impact factor: 5.469

8.  Intrinsic dynamics of an enzyme underlies catalysis.

Authors:  Elan Z Eisenmesser; Oscar Millet; Wladimir Labeikovsky; Dmitry M Korzhnev; Magnus Wolf-Watz; Daryl A Bosco; Jack J Skalicky; Lewis E Kay; Dorothee Kern
Journal:  Nature       Date:  2005-11-03       Impact factor: 49.962

9.  3D NMR experiments for measuring 15N relaxation data of large proteins: application to the 44 kDa ectodomain of SIV gp41.

Authors:  M Caffrey; J Kaufman; S J Stahl; P T Wingfield; A M Gronenborn; G M Clore
Journal:  J Magn Reson       Date:  1998-12       Impact factor: 2.229

10.  Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation.

Authors:  N A Farrow; R Muhandiram; A U Singer; S M Pascal; C M Kay; G Gish; S E Shoelson; T Pawson; J D Forman-Kay; L E Kay
Journal:  Biochemistry       Date:  1994-05-17       Impact factor: 3.162

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  1 in total

1.  Triple resonance ¹⁵Ν NMR relaxation experiments for studies of intrinsically disordered proteins.

Authors:  Pavel Srb; Jiří Nováček; Pavel Kadeřávek; Alžbeta Rabatinová; Libor Krásný; Jitka Žídková; Janette Bobálová; Vladimír Sklenář; Lukáš Žídek
Journal:  J Biomol NMR       Date:  2017-10-25       Impact factor: 2.835

  1 in total

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