Literature DB >> 15644463

An inducible targeted tagging system for localized saturation mutagenesis in Arabidopsis.

Bindu Nishal1, Titima Tantikanjana, Venkatesan Sundaresan.   

Abstract

We describe a system of inducible insertional mutagenesis based on the Ac-Ds family of transposons for targeted tagging in Arabidopsis (Arabidopsis thaliana). In this system, the Ac and Ds elements are carried within the same T-DNA and a heat shock-inducible transposase fusion is utilized to control the levels of transposase gene expression, generating transpositions that can be subsequently stabilized without requiring crossing or segregation. We have mapped 40 single-copy lines by thermal asymmetric interlaced-PCR, which can be used as potential launch pads for heat shock mutagenesis. Using a starter line selected for detailed analysis, the efficiency of tagging over a 50-kb region in the genome was examined. Hits were obtained in the targeted genes with multiple alleles for most genes, with approximately equal numbers of hits detected in genes on either side of the T-DNA. These results establish the feasibility of our approach for localized saturation mutagenesis in Arabidopsis. This system is very efficient and much less laborious as compared to conventional crossing schemes and may be generally applicable to other plant species for which large-scale T-DNA tagging is not currently feasible.

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Year:  2005        PMID: 15644463      PMCID: PMC548834          DOI: 10.1104/pp.104.050633

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  26 in total

1.  Analysis of flanking sequences from dissociation insertion lines: a database for reverse genetics in Arabidopsis.

Authors:  S Parinov; M Sevugan; D Ye; W C Yang; M Kumaran; V Sundaresan
Journal:  Plant Cell       Date:  1999-12       Impact factor: 11.277

2.  A high-throughput Arabidopsis reverse genetics system.

Authors:  Allen Sessions; Ellen Burke; Gernot Presting; George Aux; John McElver; David Patton; Bob Dietrich; Patrick Ho; Johana Bacwaden; Cynthia Ko; Joseph D Clarke; David Cotton; David Bullis; Jennifer Snell; Trini Miguel; Don Hutchison; Bill Kimmerly; Theresa Mitzel; Fumiaki Katagiri; Jane Glazebrook; Marc Law; Stephen A Goff
Journal:  Plant Cell       Date:  2002-12       Impact factor: 11.277

3.  Resources for targeted insertional and deletional mutagenesis in Arabidopsis.

Authors:  Sen Zhang; Surabhi Raina; Hong Li; Jun Li; Ewa Dec; Hong Ma; Hai Huang; Nina V Fedoroff
Journal:  Plant Mol Biol       Date:  2003-09       Impact factor: 4.076

4.  Characterization and mapping of Ds-GUS-T-DNA lines for targeted insertional mutagenesis.

Authors:  D Smith; Y Yanai; Y G Liu; S Ishiguro; K Okada; D Shibata; R F Whittier; N V Fedoroff
Journal:  Plant J       Date:  1996-10       Impact factor: 6.417

5.  Efficient isolation and mapping of Arabidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR.

Authors:  Y G Liu; N Mitsukawa; T Oosumi; R F Whittier
Journal:  Plant J       Date:  1995-09       Impact factor: 6.417

6.  Alkali treatment for rapid preparation of plant material for reliable PCR analysis.

Authors:  V I Klimyuk; B J Carroll; C M Thomas; J D Jones
Journal:  Plant J       Date:  1993-03       Impact factor: 6.417

7.  Early flower development in Arabidopsis.

Authors:  D R Smyth; J L Bowman; E M Meyerowitz
Journal:  Plant Cell       Date:  1990-08       Impact factor: 11.277

Review 8.  Functional genomics in Arabidopsis: large-scale insertional mutagenesis complements the genome sequencing project.

Authors:  S Parinov; V Sundaresan
Journal:  Curr Opin Biotechnol       Date:  2000-04       Impact factor: 9.740

9.  Characterization of the transposition pattern of the Ac element in Arabidopsis thaliana using endonuclease I-SceI.

Authors:  C Machida; H Onouchi; J Koizumi; S Hamada; E Semiarti; S Torikai; Y Machida
Journal:  Proc Natl Acad Sci U S A       Date:  1997-08-05       Impact factor: 11.205

10.  Genome-wide insertional mutagenesis of Arabidopsis thaliana.

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Journal:  Science       Date:  2003-08-01       Impact factor: 47.728

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  13 in total

1.  Genome rearrangements in maize induced by alternative transposition of reversed ac/ds termini.

Authors:  Chuanhe Yu; Jianbo Zhang; Thomas Peterson
Journal:  Genetics       Date:  2011-02-21       Impact factor: 4.562

2.  Targeted Ds-tagging strategy generates high allelic diversity at the Arabidopsis HY2 locus.

Authors:  Audrey Creff; Bénédicte Léonard; Thierry Desnos
Journal:  Plant Mol Biol       Date:  2006-07       Impact factor: 4.076

3.  High-throughput generation of an activation-tagged mutant library for functional genomic analyses in tobacco.

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4.  Controlled expression of recombinant proteins in Physcomitrella patens by a conditional heat-shock promoter: a tool for plant research and biotechnology.

Authors:  Younousse Saidi; Andrija Finka; Mickhail Chakhporanian; Jean-Pierre Zrÿd; Didier G Schaefer; Pierre Goloubinoff
Journal:  Plant Mol Biol       Date:  2005-11       Impact factor: 4.076

5.  Ac-immobilized, a stable source of Activator transposase that mediates sporophytic and gametophytic excision of Dissociation elements in maize.

Authors:  Liza J Conrad; Thomas P Brutnell
Journal:  Genetics       Date:  2005-09-02       Impact factor: 4.562

6.  Pea chloroplast DnaJ-J8 and Toc12 are encoded by the same gene and localized in the stroma.

Authors:  Chi-Chou Chiu; Lih-Jen Chen; Hsou-min Li
Journal:  Plant Physiol       Date:  2010-09-14       Impact factor: 8.340

7.  The rice miniature inverted repeat transposable element mPing is an effective insertional mutagen in soybean.

Authors:  C Nathan Hancock; Feng Zhang; Kristen Floyd; Aaron O Richardson; Peter Lafayette; Donna Tucker; Susan R Wessler; Wayne A Parrott
Journal:  Plant Physiol       Date:  2011-08-15       Impact factor: 8.340

8.  The TIE1 transcriptional repressor links TCP transcription factors with TOPLESS/TOPLESS-RELATED corepressors and modulates leaf development in Arabidopsis.

Authors:  Qing Tao; Dongshu Guo; Baoye Wei; Fan Zhang; Changxu Pang; Hao Jiang; Jinzhe Zhang; Tong Wei; Hongya Gu; Li-Jia Qu; Genji Qin
Journal:  Plant Cell       Date:  2013-02-26       Impact factor: 11.277

9.  Transposon based activation tagging in diploid strawberry and monoploid derivatives of potato.

Authors:  Nan Lu; Jared D Carter; Tatiana Boluarte Medina; Sarah H Holt; Norma Constanza Manrique-Carpintero; Kendall T Upham; Andy Pereira; Vladimir Shulaev; Richard E Veilleux
Journal:  Plant Cell Rep       Date:  2014-04-12       Impact factor: 4.570

Review 10.  Phenome analysis in plant species using loss-of-function and gain-of-function mutants.

Authors:  Takashi Kuromori; Shinya Takahashi; Youichi Kondou; Kazuo Shinozaki; Minami Matsui
Journal:  Plant Cell Physiol       Date:  2009-06-05       Impact factor: 4.927

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