Literature DB >> 16897478

Targeted Ds-tagging strategy generates high allelic diversity at the Arabidopsis HY2 locus.

Audrey Creff1, Bénédicte Léonard, Thierry Desnos.   

Abstract

The targeted (or directed) tagging is a strategy aimed to mobilize a tranposon into a specific gene (target). Only a very few Arabidopsis genes have been tagged by this way, thus the efficiency of the strategy, as well as the diversity of the alleles obtained are not well documented. We have used a maize Ds element in a directed tagging of HY2. The starting Ds element, located 22 kb proximal to HY2, has been remobilized in a cross with an Ac transposase source line. From the F2 progeny of 4800 F1 we phenotypically isolated seven hy2 mutants. Molecular analysis of these alleles revealed that two contained a Ds element in HY2 and were instable, three have a large deletion that partially or completely removed HY2, one has a footprint in a HY2 exon and one leaky allele consisted of a 22 kb inversion upstream the HY2 coding sequence. Thus, the transposon-based directed tagging strategy generates a wide diversity of tagged and non-tagged alleles that can be used to generate allelic series or deletion of clustered genes.

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Year:  2006        PMID: 16897478     DOI: 10.1007/s11103-006-0035-6

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN: 0167-4412            Impact factor:   4.076


  31 in total

1.  Analysis of flanking sequences from dissociation insertion lines: a database for reverse genetics in Arabidopsis.

Authors:  S Parinov; M Sevugan; D Ye; W C Yang; M Kumaran; V Sundaresan
Journal:  Plant Cell       Date:  1999-12       Impact factor: 11.277

2.  Resources for targeted insertional and deletional mutagenesis in Arabidopsis.

Authors:  Sen Zhang; Surabhi Raina; Hong Li; Jun Li; Ewa Dec; Hong Ma; Hai Huang; Nina V Fedoroff
Journal:  Plant Mol Biol       Date:  2003-09       Impact factor: 4.076

3.  Transposition of reversed Ac element ends generates chromosome rearrangements in maize.

Authors:  Jianbo Zhang; Thomas Peterson
Journal:  Genetics       Date:  2004-08       Impact factor: 4.562

4.  DEX1, a novel plant protein, is required for exine pattern formation during pollen development in Arabidopsis.

Authors:  D M Paxson-Sowders; C H Dodrill; H A Owen; C A Makaroff
Journal:  Plant Physiol       Date:  2001-12       Impact factor: 8.340

5.  Molecular and physiological characterization of arabidopsis GAI alleles obtained in targeted Ds-tagging experiments.

Authors:  Jinrong Peng; Donald E Richards; Thomas Moritz; Hiroshi Ezura; Pierre Carol; Nicholas P Harberd
Journal:  Planta       Date:  2002-02       Impact factor: 4.116

Review 6.  From sequence to phenotype: reverse genetics in Drosophila melanogaster.

Authors:  Melissa D Adams; Jeff J Sekelsky
Journal:  Nat Rev Genet       Date:  2002-03       Impact factor: 53.242

7.  Functional genomic analysis of the HY2 family of ferredoxin-dependent bilin reductases from oxygenic photosynthetic organisms.

Authors:  N Frankenberg; K Mukougawa; T Kohchi; J C Lagarias
Journal:  Plant Cell       Date:  2001-04       Impact factor: 11.277

8.  An inducible targeted tagging system for localized saturation mutagenesis in Arabidopsis.

Authors:  Bindu Nishal; Titima Tantikanjana; Venkatesan Sundaresan
Journal:  Plant Physiol       Date:  2005-01       Impact factor: 8.340

9.  Different Roles for Phytochrome in Etiolated and Green Plants Deduced from Characterization of Arabidopsis thaliana Mutants.

Authors:  J. Chory; C. A. Peto; M. Ashbaugh; R. Saganich; L. Pratt; F. Ausubel
Journal:  Plant Cell       Date:  1989-09       Impact factor: 11.277

10.  The HY2 gene as an efficient marker for transposon excision in Arabidopsis.

Authors:  B Léonard; A Creff; T Desnos
Journal:  Mol Genet Genomics       Date:  2003-08-06       Impact factor: 3.291

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  1 in total

1.  The two Arabidopsis RPS6 genes, encoding for cytoplasmic ribosomal proteins S6, are functionally equivalent.

Authors:  Audrey Creff; Rodnay Sormani; Thierry Desnos
Journal:  Plant Mol Biol       Date:  2010-05-01       Impact factor: 4.076

  1 in total

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