Literature DB >> 21844309

The rice miniature inverted repeat transposable element mPing is an effective insertional mutagen in soybean.

C Nathan Hancock1, Feng Zhang, Kristen Floyd, Aaron O Richardson, Peter Lafayette, Donna Tucker, Susan R Wessler, Wayne A Parrott.   

Abstract

Insertional mutagenesis of legume genomes such as soybean (Glycine max) should aid in identifying genes responsible for key traits such as nitrogen fixation and seed quality. The relatively low throughput of soybean transformation necessitates the use of a transposon-tagging strategy where a single transformation event will produce many mutations over a number of generations. However, existing transposon-tagging tools being used in legumes are of limited utility because of restricted transposition (Ac/Ds: soybean) or the requirement for tissue culture activation (Tnt1: Medicago truncatula). A recently discovered transposable element from rice (Oryza sativa), mPing, and the genes required for its mobilization, were transferred to soybean to determine if it will be an improvement over the other available transposon-tagging tools. Stable transformation events in soybean were tested for mPing transposition. Analysis of mPing excision at early and late embryo developmental stages revealed increased excision during late development in most transgenic lines, suggesting that transposition is developmentally regulated. Transgenic lines that produced heritable mPing insertions were identified, with the plants from the highest activity line producing at least one new insertion per generation. Analysis of the mPing insertion sites in the soybean genome revealed that features displayed in rice were retained including transposition to unlinked sites and a preference for insertion within 2.5 kb of a gene. Taken together these findings indicate that mPing has the characteristics necessary for an effective transposon-tagging resource.

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Year:  2011        PMID: 21844309      PMCID: PMC3192579          DOI: 10.1104/pp.111.181206

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  32 in total

1.  Transposon Display identifies individual transposable elements in high copy number lines.

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Journal:  Plant J       Date:  1998-01       Impact factor: 6.417

2.  Unexpected consequences of a sudden and massive transposon amplification on rice gene expression.

Authors:  Ken Naito; Feng Zhang; Takuji Tsukiyama; Hiroki Saito; C Nathan Hancock; Aaron O Richardson; Yutaka Okumoto; Takatoshi Tanisaka; Susan R Wessler
Journal:  Nature       Date:  2009-10-22       Impact factor: 49.962

3.  Rapid isolation of high molecular weight plant DNA.

Authors:  M G Murray; W F Thompson
Journal:  Nucleic Acids Res       Date:  1980-10-10       Impact factor: 16.971

4.  A draft sequence of the rice genome (Oryza sativa L. ssp. indica).

Authors:  Jun Yu; Songnian Hu; Jun Wang; Gane Ka-Shu Wong; Songgang Li; Bin Liu; Yajun Deng; Li Dai; Yan Zhou; Xiuqing Zhang; Mengliang Cao; Jing Liu; Jiandong Sun; Jiabin Tang; Yanjiong Chen; Xiaobing Huang; Wei Lin; Chen Ye; Wei Tong; Lijuan Cong; Jianing Geng; Yujun Han; Lin Li; Wei Li; Guangqiang Hu; Xiangang Huang; Wenjie Li; Jian Li; Zhanwei Liu; Long Li; Jianping Liu; Qiuhui Qi; Jinsong Liu; Li Li; Tao Li; Xuegang Wang; Hong Lu; Tingting Wu; Miao Zhu; Peixiang Ni; Hua Han; Wei Dong; Xiaoyu Ren; Xiaoli Feng; Peng Cui; Xianran Li; Hao Wang; Xin Xu; Wenxue Zhai; Zhao Xu; Jinsong Zhang; Sijie He; Jianguo Zhang; Jichen Xu; Kunlin Zhang; Xianwu Zheng; Jianhai Dong; Wanyong Zeng; Lin Tao; Jia Ye; Jun Tan; Xide Ren; Xuewei Chen; Jun He; Daofeng Liu; Wei Tian; Chaoguang Tian; Hongai Xia; Qiyu Bao; Gang Li; Hui Gao; Ting Cao; Juan Wang; Wenming Zhao; Ping Li; Wei Chen; Xudong Wang; Yong Zhang; Jianfei Hu; Jing Wang; Song Liu; Jian Yang; Guangyu Zhang; Yuqing Xiong; Zhijie Li; Long Mao; Chengshu Zhou; Zhen Zhu; Runsheng Chen; Bailin Hao; Weimou Zheng; Shouyi Chen; Wei Guo; Guojie Li; Siqi Liu; Ming Tao; Jian Wang; Lihuang Zhu; Longping Yuan; Huanming Yang
Journal:  Science       Date:  2002-04-05       Impact factor: 47.728

5.  Relationship between nucleosome positioning and DNA methylation.

Authors:  Ramakrishna K Chodavarapu; Suhua Feng; Yana V Bernatavichute; Pao-Yang Chen; Hume Stroud; Yanchun Yu; Jonathan A Hetzel; Frank Kuo; Jin Kim; Shawn J Cokus; David Casero; Maria Bernal; Peter Huijser; Amander T Clark; Ute Krämer; Sabeeha S Merchant; Xiaoyu Zhang; Steven E Jacobsen; Matteo Pellegrini
Journal:  Nature       Date:  2010-05-30       Impact factor: 49.962

6.  An inducible targeted tagging system for localized saturation mutagenesis in Arabidopsis.

Authors:  Bindu Nishal; Titima Tantikanjana; Venkatesan Sundaresan
Journal:  Plant Physiol       Date:  2005-01       Impact factor: 8.340

7.  A versatile transposon-based activation tag vector system for functional genomics in cereals and other monocot plants.

Authors:  Shaohong Qu; Aparna Desai; Rod Wing; Venkatesan Sundaresan
Journal:  Plant Physiol       Date:  2007-11-09       Impact factor: 8.340

8.  Mobilization of a transposon in the rice genome.

Authors:  Tetsuya Nakazaki; Yutaka Okumoto; Akira Horibata; Satoshi Yamahira; Masayoshi Teraishi; Hidetaka Nishida; Hiromo Inoue; Takatoshi Tanisaka
Journal:  Nature       Date:  2003-01-09       Impact factor: 49.962

9.  An active DNA transposon family in rice.

Authors:  Ning Jiang; Zhirong Bao; Xiaoyu Zhang; Hirohiko Hirochika; Sean R Eddy; Susan R McCouch; Susan R Wessler
Journal:  Nature       Date:  2003-01-09       Impact factor: 49.962

10.  The plant MITE mPing is mobilized in anther culture.

Authors:  Kazuhiro Kikuchi; Kazuki Terauchi; Masamitsu Wada; Hiro-Yuki Hirano
Journal:  Nature       Date:  2003-01-09       Impact factor: 49.962

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  31 in total

1.  Co-expression of soybean Dicer-like genes in response to stress and development.

Authors:  Shaun J Curtin; Michael B Kantar; Han W Yoon; Adam M Whaley; Jessica A Schlueter; Robert M Stupar
Journal:  Funct Integr Genomics       Date:  2012-04-15       Impact factor: 3.410

2.  A Medicago truncatula tobacco retrotransposon insertion mutant collection with defects in nodule development and symbiotic nitrogen fixation.

Authors:  Catalina I Pislariu; Jeremy D Murray; JiangQi Wen; Viviane Cosson; RajaSekhara Reddy Duvvuru Muni; Mingyi Wang; Vagner A Benedito; Andry Andriankaja; Xiaofei Cheng; Ivone Torres Jerez; Samuel Mondy; Shulan Zhang; Mark E Taylor; Million Tadege; Pascal Ratet; Kirankumar S Mysore; Rujin Chen; Michael K Udvardi
Journal:  Plant Physiol       Date:  2012-06-07       Impact factor: 8.340

3.  Systematic Mutagenesis of Serine Hydroxymethyltransferase Reveals an Essential Role in Nematode Resistance.

Authors:  Pramod K Kandoth; Shiming Liu; Elizabeth Prenger; Andrew Ludwig; Naoufal Lakhssassi; Robert Heinz; Zhou Zhou; Amanda Howland; Joshua Gunther; Samantha Eidson; Andi Dhroso; Peter LaFayette; Donna Tucker; Sarah Johnson; James Anderson; Alaa Alaswad; Silvia R Cianzio; Wayne A Parrott; Dmitry Korkin; Khalid Meksem; Melissa G Mitchum
Journal:  Plant Physiol       Date:  2017-09-14       Impact factor: 8.340

Review 4.  Modulating signaling networks by CRISPR/Cas9-mediated transposable element insertion.

Authors:  Luis María Vaschetto
Journal:  Curr Genet       Date:  2017-10-14       Impact factor: 3.886

5.  Tnt1 retrotransposon mutagenesis: a tool for soybean functional genomics.

Authors:  Yaya Cui; Shyam Barampuram; Minviluz G Stacey; C Nathan Hancock; Seth Findley; Melanie Mathieu; Zhanyuan Zhang; Wayne A Parrott; Gary Stacey
Journal:  Plant Physiol       Date:  2012-11-01       Impact factor: 8.340

6.  A transgenic, visual screenable marker for soybean seeds.

Authors:  Lisa Kanizay; Thomas Jacobs; C Nathan Hancock
Journal:  Transgenic Res       Date:  2015-12-10       Impact factor: 2.788

7.  Targeted genome modifications in soybean with CRISPR/Cas9.

Authors:  Thomas B Jacobs; Peter R LaFayette; Robert J Schmitz; Wayne A Parrott
Journal:  BMC Biotechnol       Date:  2015-03-12       Impact factor: 2.563

8.  A rice Stowaway MITE for gene transfer in yeast.

Authors:  Isam Fattash; Priyanka Bhardwaj; Caleb Hui; Guojun Yang
Journal:  PLoS One       Date:  2013-05-21       Impact factor: 3.240

9.  Precise repair of mPing excision sites is facilitated by target site duplication derived microhomology.

Authors:  David M Gilbert; M Catherine Bridges; Ashley E Strother; Courtney E Burckhalter; James M Burnette; C Nathan Hancock
Journal:  Mob DNA       Date:  2015-09-07

Review 10.  Advances in genome studies in plants and animals.

Authors:  R Appels; J Nystrom-Persson; G Keeble-Gagnere
Journal:  Funct Integr Genomics       Date:  2014-03-14       Impact factor: 3.410

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