Literature DB >> 24728112

Transposon based activation tagging in diploid strawberry and monoploid derivatives of potato.

Nan Lu1, Jared D Carter, Tatiana Boluarte Medina, Sarah H Holt, Norma Constanza Manrique-Carpintero, Kendall T Upham, Andy Pereira, Vladimir Shulaev, Richard E Veilleux.   

Abstract

KEY MESSAGE: Diploid strawberry and potato transformed with a transposon tagging construct exhibited either global (strawberry) or local transposition (potato). An activation tagged, compact-sized strawberry mutant overexpressed the gene adjacent to Ds. As major fruit and vegetable crops, respectively, strawberry and potato are among the first horticultural crops with draft genome sequences. To study gene function, we examined transposon-tagged mutant strategies in model populations for both species, Fragaria vesca and Solanum tuberosum Group Phureja, using the same Activation/Dissociation (Ac/Ds) construct. Early somatic transposition during tissue culture occurred at a frequency of 18.5% in strawberry but not in potato transformants. Green fluorescent protein under a monocot promoter was a more reliable selectable marker in strawberry compared to potato. BASTA (gluphosinate herbicide) resistance served as an effective selectable marker for both species (80 and 85% reliable in strawberry and potato, respectively), although the effective concentration differed (0.5% for strawberry and 0.03% for potato). Transposons preferentially reinserted within genes (exons and introns) in both species. Real-time quantitative PCR revealed enhanced gene expression (670 and 298-fold expression compared to wild type in petiole and leaf tissue, respectively) for an activation tagged strawberry mutant with Ds inserted about 0.6 kb upstream from a gene coding for an epidermis-specific secreted glycoprotein EP1. Our data also suggested that endopolyploid (diploid) cells occurring in leaf explants of monoploid potato were the favored targets of T-DNA integration during transformation. Mutants obtained in these studies provide a useful resource for future genetic studies.

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Year:  2014        PMID: 24728112     DOI: 10.1007/s00299-014-1610-y

Source DB:  PubMed          Journal:  Plant Cell Rep        ISSN: 0721-7714            Impact factor:   4.570


  34 in total

1.  High-efficiency transformation of the diploid strawberry (Fragaria vesca) for functional genomics.

Authors:  Teruko Oosumi; Hope A Gruszewski; Leslie A Blischak; Aaron J Baxter; Phillip A Wadl; Joel L Shuman; Richard E Veilleux; Vladimir Shulaev
Journal:  Planta       Date:  2005-12-01       Impact factor: 4.116

2.  Plant cell wall proteomics: mass spectrometry data, a trove for research on protein structure/function relationships.

Authors:  Cécile Albenne; Hervé Canut; Georges Boudart; Yu Zhang; Hélène San Clemente; Rafael Pont-Lezica; Elisabeth Jamet
Journal:  Mol Plant       Date:  2009-08-10       Impact factor: 13.164

3.  Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans.

Authors:  A Fire; S Xu; M K Montgomery; S A Kostas; S E Driver; C C Mello
Journal:  Nature       Date:  1998-02-19       Impact factor: 49.962

4.  Exposure to toxic concentrations of aluminum activates a MAPK-like protein in cell suspension cultures of Coffea arabica.

Authors:  Gabriela A Arroyo-Serralta; Angela Kú-González; S M Teresa Hernández-Sotomayor; José J Zúñiga Aguilar
Journal:  Plant Physiol Biochem       Date:  2005-01-21       Impact factor: 4.270

5.  Metabolite profiling and quantification of phytochemicals in potato extracts using ultra-high-performance liquid chromatography-mass spectrometry.

Authors:  Esther Swee Lan Chong; Tony K McGhie; Julian A Heyes; Kathryn M Stowell
Journal:  J Sci Food Agric       Date:  2013-07-19       Impact factor: 3.638

6.  Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana.

Authors:  S J Clough; A F Bent
Journal:  Plant J       Date:  1998-12       Impact factor: 6.417

7.  An inducible targeted tagging system for localized saturation mutagenesis in Arabidopsis.

Authors:  Bindu Nishal; Titima Tantikanjana; Venkatesan Sundaresan
Journal:  Plant Physiol       Date:  2005-01       Impact factor: 8.340

8.  Genome-wide insertional mutagenesis of Arabidopsis thaliana.

Authors:  José M Alonso; Anna N Stepanova; Thomas J Leisse; Christopher J Kim; Huaming Chen; Paul Shinn; Denise K Stevenson; Justin Zimmerman; Pascual Barajas; Rosa Cheuk; Carmelita Gadrinab; Collen Heller; Albert Jeske; Eric Koesema; Cristina C Meyers; Holly Parker; Lance Prednis; Yasser Ansari; Nathan Choy; Hashim Deen; Michael Geralt; Nisha Hazari; Emily Hom; Meagan Karnes; Celene Mulholland; Ral Ndubaku; Ian Schmidt; Plinio Guzman; Laura Aguilar-Henonin; Markus Schmid; Detlef Weigel; David E Carter; Trudy Marchand; Eddy Risseeuw; Debra Brogden; Albana Zeko; William L Crosby; Charles C Berry; Joseph R Ecker
Journal:  Science       Date:  2003-08-01       Impact factor: 47.728

9.  An active ac/ds transposon system for activation tagging in tomato cultivar m82 using clonal propagation.

Authors:  Jared D Carter; Andy Pereira; Allan W Dickerman; Richard E Veilleux
Journal:  Plant Physiol       Date:  2013-04-08       Impact factor: 8.340

10.  Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting.

Authors:  Tomas Cermak; Erin L Doyle; Michelle Christian; Li Wang; Yong Zhang; Clarice Schmidt; Joshua A Baller; Nikunj V Somia; Adam J Bogdanove; Daniel F Voytas
Journal:  Nucleic Acids Res       Date:  2011-04-14       Impact factor: 16.971

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  2 in total

1.  An Efficient System for Ds Transposon Tagging in Brachypodium distachyon.

Authors:  Hongyu Wu; Xiaodong Xue; Caihua Qin; Yi Xu; Yuyu Guo; Xiang Li; Wei Lv; Qinxia Li; Chuangxue Mao; Luzhao Li; Suzhen Zhao; Xiaoquan Qi; Hailong An
Journal:  Plant Physiol       Date:  2019-03-13       Impact factor: 8.340

2.  Activation-tagging in indica rice identifies a novel transcription factor subunit, NF-YC13 associated with salt tolerance.

Authors:  P Manimaran; S Venkata Reddy; Mazahar Moin; M Raghurami Reddy; Poli Yugandhar; S S Mohanraj; S M Balachandran; P B Kirti
Journal:  Sci Rep       Date:  2017-08-24       Impact factor: 4.379

  2 in total

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