Literature DB >> 15238010

Ab initio study of (13)C(alpha) chemical shift anisotropy tensors in peptides.

Jeff Birn1, Alan Poon, Y Mao, A Ramamoorthy.   

Abstract

This study reports magnitudes and the orientation of the (13)C(alpha) chemical shift anisotropy (CSA) tensors of peptides obtained using quantum chemical calculations. The dependency of the CSA tensor parameters on the energy optimization of hydrogen atom positions and hydrogen bonding effects and the use of zwitterionic peptides in the calculations are examined. Our results indicate that the energy optimization of the hydrogen atom positions in crystal structures is necessary to obtain accurate CSA tensors. The inclusion of intermolecular effects such as hydrogen bonding in the calculations provided better agreement between the calculated and experimental values; however, the use of zwitterionic peptides in calculations, with or without the inclusion of hydrogen bonding, did not improve the results. In addition, our calculated values are in good agreement with tensor values obtained from solid-state NMR experiments on glycine-containing tripeptides. In the case of peptides containing an aromatic residue, calculations on an isolated peptide yielded more accurate isotropic shift values than the calculations on extended structures of the peptide. The calculations also suggested that the presence of an aromatic ring in the extended crystal peptide structure influences the magnitude of the delta(22) which the present level of ab initio calculations are unable to reproduce.

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Year:  2004        PMID: 15238010      PMCID: PMC1477785          DOI: 10.1021/ja049879z

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  25 in total

1.  The way to NMR structures of proteins.

Authors:  K Wüthrich
Journal:  Nat Struct Biol       Date:  2001-11

2.  Orientation of amide-nitrogen-15 chemical shift tensors in peptides: a quantum chemical study.

Authors:  J R Brender; D M Taylor; A Ramamoorthy
Journal:  J Am Chem Soc       Date:  2001-02-07       Impact factor: 15.419

3.  C(alpha) chemical shift tensors in helical peptides by dipolar-modulated chemical shift recoupling NMR.

Authors:  Xiaolan Yao; Satoru Yamaguchi; Mei Hong
Journal:  J Biomol NMR       Date:  2002-09       Impact factor: 2.835

Review 4.  Weak alignment offers new NMR opportunities to study protein structure and dynamics.

Authors:  Ad Bax
Journal:  Protein Sci       Date:  2003-01       Impact factor: 6.725

5.  Solid-state (13)C NMR chemical shift anisotropy tensors of polypeptides.

Authors:  Y Wei; D K Lee; A Ramamoorthy
Journal:  J Am Chem Soc       Date:  2001-06-27       Impact factor: 15.419

6.  Carbon-13 NMR shielding in the twenty common amino acids: comparisons with experimental results in proteins.

Authors:  Haihong Sun; Lori K Sanders; Eric Oldfield
Journal:  J Am Chem Soc       Date:  2002-05-15       Impact factor: 15.419

7.  Determination of calpha chemical shift tensor orientation in peptides by dipolar-modulated chemical shift recoupling NMR spectroscopy.

Authors:  Xiaolan Yao; Mei Hong
Journal:  J Am Chem Soc       Date:  2002-03-20       Impact factor: 15.419

8.  Experimental and theoretical investigation of the 13C and 15N chemical shift tensors in melanostatin-exploring the chemical shift tensor as a structural probe.

Authors:  Mark Strohmeier; David M Grant
Journal:  J Am Chem Soc       Date:  2004-01-28       Impact factor: 15.419

9.  Glycyl C(alpha) chemical shielding in tripeptides: measurement by solid-state NMR and correlation with X-ray structure and theory.

Authors:  Eduard Y Chekmenev; Ray Z Xu; Mark S Mashuta; Richard J Wittebort
Journal:  J Am Chem Soc       Date:  2002-10-09       Impact factor: 15.419

10.  Cross-correlated relaxation enhanced 1H[bond]13C NMR spectroscopy of methyl groups in very high molecular weight proteins and protein complexes.

Authors:  Vitali Tugarinov; Peter M Hwang; Jason E Ollerenshaw; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2003-08-27       Impact factor: 15.419

View more
  9 in total

1.  Ultrahigh resolution protein structures using NMR chemical shift tensors.

Authors:  Benjamin J Wylie; Lindsay J Sperling; Andrew J Nieuwkoop; W Trent Franks; Eric Oldfield; Chad M Rienstra
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-03       Impact factor: 11.205

Review 2.  Chemical shift tensor - the heart of NMR: Insights into biological aspects of proteins.

Authors:  Hazime Saitô; Isao Ando; Ayyalusamy Ramamoorthy
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05-07       Impact factor: 9.795

3.  Polymorphs and hydrates of acyclovir.

Authors:  Katie M Lutker; Rosalynn Quiñones; Jiadi Xu; Ayyalusamy Ramamoorthy; Adam J Matzger
Journal:  J Pharm Sci       Date:  2010-11-04       Impact factor: 3.534

4.  Determination of 15N chemical shift anisotropy from a membrane-bound protein by NMR spectroscopy.

Authors:  Manoj Kumar Pandey; Subramanian Vivekanandan; Shivani Ahuja; Kumar Pichumani; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Phys Chem B       Date:  2012-06-04       Impact factor: 2.991

5.  Calculation of chemical shift anisotropy in proteins.

Authors:  Sishi Tang; David A Case
Journal:  J Biomol NMR       Date:  2011-08-26       Impact factor: 2.835

6.  Site-specific backbone amide (15)N chemical shift anisotropy tensors in a small protein from liquid crystal and cross-correlated relaxation measurements.

Authors:  Lishan Yao; Alexander Grishaev; Gabriel Cornilescu; Ad Bax
Journal:  J Am Chem Soc       Date:  2010-03-31       Impact factor: 15.419

7.  Recoupling of chemical shift anisotropy by R-symmetry sequences in magic angle spinning NMR spectroscopy.

Authors:  Guangjin Hou; In-Ja L Byeon; Jinwoo Ahn; Angela M Gronenborn; Tatyana Polenova
Journal:  J Chem Phys       Date:  2012-10-07       Impact factor: 3.488

8.  Cytochrome-P450-cytochrome-b5 interaction in a membrane environment changes 15N chemical shift anisotropy tensors.

Authors:  Manoj Kumar Pandey; Subramanian Vivekanandan; Shivani Ahuja; Rui Huang; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Phys Chem B       Date:  2013-10-28       Impact factor: 2.991

9.  Identify Beta-Hairpin Motifs with Quadratic Discriminant Algorithm Based on the Chemical Shifts.

Authors:  Feng YongE; Kou GaoShan
Journal:  PLoS One       Date:  2015-09-30       Impact factor: 3.240

  9 in total

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