Literature DB >> 11890824

Determination of calpha chemical shift tensor orientation in peptides by dipolar-modulated chemical shift recoupling NMR spectroscopy.

Xiaolan Yao1, Mei Hong.   

Abstract

We present a new method for determining the orientation of chemical shift tensors in polycrystalline solids with site resolution and demonstrate its application to the determination of the Calpha chemical shift tensor orientation in a model peptide with beta-sheet torsion angles. The tensor orientation is obtained under magic angle spinning by modulating a recoupled chemical shift anisotropy (CSA) pattern with various dipolar couplings. These dipolar-modulated chemical shift patterns constitute the indirect dimension of a 2D spectrum and are resolved according to the isotropic chemical shifts of different sites in the direct dimension. These dipolar-modulated CSA spectra are equivalent to the projection of a 2D static separated-local-field spectrum onto its chemical shift dimension, except that its dipolar dimension is multiplied with a modulation function. Both (13)C-(1)H and (13)C-(15)N dipolar couplings can modulate the CSA spectra of the Calpha site in an amino acid and yield the relative orientations of the chemical shift principal axes to the C-H and C-N bonds. We demonstrate the C-H and C-N modulated CSA experiments on methylmalonic acid and N-tBoc-glycine, respectively. The MAS results agree well with the results of the 2D separated-local-field spectra, thus confirming the validity of this MAS dipolar-modulation approach. Using this technique, we measured the Val Calpha tensor orientation in N-acetylvaline, which has beta-sheet torsion angles. The sigma(11) axis is oriented at 158 degrees (or 22 degrees) from the C-H bond, while the sigma(22) axis is tilted by 144 degrees (or 36 degrees) from the C-N bond. Both the orientations and the magnitude of this chemical shift tensor are in excellent agreement with quantum chemical calculations.

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Year:  2002        PMID: 11890824     DOI: 10.1021/ja017137p

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  11 in total

1.  C(alpha) chemical shift tensors in helical peptides by dipolar-modulated chemical shift recoupling NMR.

Authors:  Xiaolan Yao; Satoru Yamaguchi; Mei Hong
Journal:  J Biomol NMR       Date:  2002-09       Impact factor: 2.835

Review 2.  Chemical shift tensor - the heart of NMR: Insights into biological aspects of proteins.

Authors:  Hazime Saitô; Isao Ando; Ayyalusamy Ramamoorthy
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05-07       Impact factor: 9.795

Review 3.  Quantum chemical studies of protein structure.

Authors:  Eric Oldfield
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-06-29       Impact factor: 6.237

4.  Determination of 15N chemical shift anisotropy from a membrane-bound protein by NMR spectroscopy.

Authors:  Manoj Kumar Pandey; Subramanian Vivekanandan; Shivani Ahuja; Kumar Pichumani; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Phys Chem B       Date:  2012-06-04       Impact factor: 2.991

5.  Determination of the orientation and dynamics of ergosterol in model membranes using uniform 13C labeling and dynamically averaged 13C chemical shift anisotropies as experimental restraints.

Authors:  O Soubias; F Jolibois; S Massou; A Milon; V Réat
Journal:  Biophys J       Date:  2005-05-27       Impact factor: 4.033

6.  Determination of 13C CSA tensors: extension of the model-independent approach to an RNA kissing complex undergoing anisotropic rotational diffusion in solution.

Authors:  Sapna Ravindranathan; Chul-Hyun Kim; Geoffrey Bodenhausen
Journal:  J Biomol NMR       Date:  2005-11       Impact factor: 2.835

7.  3D (13)C-(13)C-(13)C correlation NMR for de novo distance determination of solid proteins and application to a human alpha-defensin.

Authors:  Shenhui Li; Yuan Zhang; Mei Hong
Journal:  J Magn Reson       Date:  2009-11-18       Impact factor: 2.229

8.  Ab initio study of (13)C(alpha) chemical shift anisotropy tensors in peptides.

Authors:  Jeff Birn; Alan Poon; Y Mao; A Ramamoorthy
Journal:  J Am Chem Soc       Date:  2004-07-14       Impact factor: 15.419

9.  Cytochrome-P450-cytochrome-b5 interaction in a membrane environment changes 15N chemical shift anisotropy tensors.

Authors:  Manoj Kumar Pandey; Subramanian Vivekanandan; Shivani Ahuja; Rui Huang; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Phys Chem B       Date:  2013-10-28       Impact factor: 2.991

10.  Quantum chemical calculations of amide-15N chemical shift anisotropy tensors for a membrane-bound cytochrome-b5.

Authors:  Manoj Kumar Pandey; Ayyalusamy Ramamoorthy
Journal:  J Phys Chem B       Date:  2013-01-10       Impact factor: 2.991

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