Literature DB >> 12449418

C(alpha) chemical shift tensors in helical peptides by dipolar-modulated chemical shift recoupling NMR.

Xiaolan Yao1, Satoru Yamaguchi, Mei Hong.   

Abstract

The C(alpha) chemical shift tensors of proteins contain information on the backbone conformation. We have determined the magnitude and orientation of the C(alpha) chemical shift tensors of two peptides with a-helical torsion angles: the Ala residue in G*AL (phi = -65.7 degrees, psi = -40 degrees), and the Val residue in GG*V (phi = -81.5 degrees, psi = -50.7 degrees). The magnitude of the tensors was determined from quasi-static powder patterns recoupled under magic-angle spinning, while the orientation of the tensors was extracted from C(alpha)-H(alpha) and C(alpha)-N dipolar modulated powder patterns. The helical Ala C(alpha) chemical shift tensor has a span of 36 ppm and an asymmetry parameter of 0.89. Its sigma11 axis is 116 degrees +/- 5 degrees from the C(alpha)-H(alpha) bond while the sigma22 axis is 40 degrees +/- 5 degrees from the C(alpha)-N bond. The Val tensor has an anisotropic span of 25 ppm and an asymmetry parameter of 0.33, both much smaller than the values for beta-sheet Val found recently (Yao and Hong, 2002). The Val sigma33 axis is tilted by 115 degrees +/- 50 from the Ca-Halpha bond and 98 degrees +/- 5 degrees from the C(alpha)-N bond. These represent the first completely experimentally determined C(alpha) chemical shift tensors of helical peptides. Using an icosahedral representation, we compared the experimental chemical shift tensors with quantum chemical calculations and found overall good agreement. These solid-state chemical shift tensors confirm the observation from cross-correlated relaxation experiments that the projection of the C(alpha) chemical shift tensor onto the C(alpha)-H(alpha) bond is much smaller in alpha-helices than in beta-sheets.

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Year:  2002        PMID: 12449418     DOI: 10.1023/a:1020626802472

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  8 in total

1.  Reply to 'conventions for tensor quantities used in nuclear magnetic resonance, nuclear quadrupole resonance and electron spin resonance spectroscopy.

Authors:  C J Jameson
Journal:  Solid State Nucl Magn Reson       Date:  1998-06       Impact factor: 2.293

2.  A robust technique for two-dimensional separation of undistorted chemical-shift anisotropy powder patterns in magic-angle-spinning NMR.

Authors:  S-F Liu; J-D Mao; K Schmidt-Rohr
Journal:  J Magn Reson       Date:  2002-03       Impact factor: 2.229

3.  Determination of calpha chemical shift tensor orientation in peptides by dipolar-modulated chemical shift recoupling NMR spectroscopy.

Authors:  Xiaolan Yao; Mei Hong
Journal:  J Am Chem Soc       Date:  2002-03-20       Impact factor: 15.419

4.  An experimental and theoretical investigation of the chemical shielding tensors of (13)C(alpha) of alanine, valine, and leucine residues in solid peptides and in proteins in solution.

Authors:  R H Havlin; D D Laws; H M Bitter; L K Sanders; H Sun; J S Grimley; D E Wemmer; A Pines; E Oldfield
Journal:  J Am Chem Soc       Date:  2001-10-24       Impact factor: 15.419

5.  A sequence preference for nucleation of alpha-helix--crystal structure of Gly-L-Ala-L-Val and Gly-L-Ala-L-Leu: some comments on the geometry of leucine zippers.

Authors:  S Chaturvedi; K Go; R Parthasarathy
Journal:  Biopolymers       Date:  1991-03       Impact factor: 2.505

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Authors:  V Lalitha; E Subramanian; J Bordner
Journal:  Int J Pept Protein Res       Date:  1984-11

Review 7.  Chemical shifts and three-dimensional protein structures.

Authors:  E Oldfield
Journal:  J Biomol NMR       Date:  1995-04       Impact factor: 2.835

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Authors:  D S Wishart; B D Sykes; F M Richards
Journal:  J Mol Biol       Date:  1991-11-20       Impact factor: 5.469

  8 in total
  3 in total

Review 1.  Chemical shift tensor - the heart of NMR: Insights into biological aspects of proteins.

Authors:  Hazime Saitô; Isao Ando; Ayyalusamy Ramamoorthy
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05-07       Impact factor: 9.795

2.  Calculation of chemical shift anisotropy in proteins.

Authors:  Sishi Tang; David A Case
Journal:  J Biomol NMR       Date:  2011-08-26       Impact factor: 2.835

3.  Ab initio study of (13)C(alpha) chemical shift anisotropy tensors in peptides.

Authors:  Jeff Birn; Alan Poon; Y Mao; A Ramamoorthy
Journal:  J Am Chem Soc       Date:  2004-07-14       Impact factor: 15.419

  3 in total

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