Literature DB >> 12358533

Glycyl C(alpha) chemical shielding in tripeptides: measurement by solid-state NMR and correlation with X-ray structure and theory.

Eduard Y Chekmenev1, Ray Z Xu, Mark S Mashuta, Richard J Wittebort.   

Abstract

We report here (13)C(alpha) chemical shielding parameters for central Gly residues in tripeptides adopting alpha-helix, beta-strand, polyglycine II, and fully extended 2 degrees structures. To assess experimental uncertainties in the shielding parameters and the effects of (14)N-(13)C(alpha) or (15)N-(13)C(alpha) dipolar coupling, stationary and magic angle spinning (MAS) spectra with and without (15)N decoupling were obtained from natural abundance and double-labeled samples containing [2-(13)C, (15)N]Gly. We find that accurate (<1 ppm uncertainty) shielding parameters are measured with good sensitivity and resolution in (15)N decoupled 1D or 2D MAS spectra of double-labeled samples. Compared to variations of isotropic shifts with peptide angles, those of (13)C(alpha) shielding anisotropy and asymmetry are greater. Trends relating shielding parameters to the 2 degrees structure are apparent, and the correlation of the experimental values with unscaled ab initio shielding calculations has an rms error of 3 ppm. Using the experimental data and the ab initio shielding values, the empirical trends relating the 2 degrees structure to shielding are extended to the larger range of torsion angles found in proteins.

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Year:  2002        PMID: 12358533     DOI: 10.1021/ja026700g

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  7 in total

1.  Unblocked statistical-coil tetrapeptides in aqueous solution: quantum-chemical computation of the carbon-13 NMR chemical shifts.

Authors:  Jorge A Vila; Héctor A Baldoni; Daniel R Ripoll; Harold A Scheraga
Journal:  J Biomol NMR       Date:  2003-06       Impact factor: 2.835

2.  Ultrahigh resolution protein structures using NMR chemical shift tensors.

Authors:  Benjamin J Wylie; Lindsay J Sperling; Andrew J Nieuwkoop; W Trent Franks; Eric Oldfield; Chad M Rienstra
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-03       Impact factor: 11.205

Review 3.  Quantum chemical studies of protein structure.

Authors:  Eric Oldfield
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-06-29       Impact factor: 6.237

4.  Proton-driven spin diffusion in rotating solids via reversible and irreversible quantum dynamics.

Authors:  Mikhail Veshtort; Robert G Griffin
Journal:  J Chem Phys       Date:  2011-10-07       Impact factor: 3.488

5.  Recoupling of chemical shift anisotropy by R-symmetry sequences in magic angle spinning NMR spectroscopy.

Authors:  Guangjin Hou; In-Ja L Byeon; Jinwoo Ahn; Angela M Gronenborn; Tatyana Polenova
Journal:  J Chem Phys       Date:  2012-10-07       Impact factor: 3.488

6.  Ab initio study of (13)C(alpha) chemical shift anisotropy tensors in peptides.

Authors:  Jeff Birn; Alan Poon; Y Mao; A Ramamoorthy
Journal:  J Am Chem Soc       Date:  2004-07-14       Impact factor: 15.419

7.  Monitoring the Site-Specific Solid-State NMR Data in Oligopeptides.

Authors:  Jiří Czernek; Jiří Brus
Journal:  Int J Mol Sci       Date:  2020-04-13       Impact factor: 5.923

  7 in total

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