Literature DB >> 11456625

Orientation of amide-nitrogen-15 chemical shift tensors in peptides: a quantum chemical study.

J R Brender1, D M Taylor, A Ramamoorthy.   

Abstract

Knowledge of the orientation of the nitrogen-15 chemical shift anisotropy (CSA) tensor is critical for a variety of experiments that provide information on protein structure and dynamics in the solid and solution states. Unfortunately, the methods available for determining the orientation of the CSA tensor experimentally have inherent limitations. Rotation studies of a single crystal provide complete information but are tedious and limited in applicability. Solid-state NMR studies on powder samples can be applied to a greater range of samples but suffer from ambiguities in the results obtained. Density functional gauge-including-atomic-orbitals (GIAO) calculations of the orientations of (15)N CSA tensors in peptides are presented here as an independent source of confirmation for these studies. A comparison of the calculated (15)N CSA orientations with the available experimental values from single-crystal and powder studies shows excellent agreement after a partial, constrained optimization of some of the crystal structures used in the calculation. The results from this study suggest that the orientation as well as the magnitudes of (15)N CSA tensors may vary from molecule to molecule. The calculated alpha(N) angle varies from 0 degrees to 24 degrees with the majority in the 10 degrees to 20 degrees range and the beta(N) angle varies from 17 degrees to 24 degrees in good agreement with most of the solid-state NMR experimental results. Hydrogen bonding is shown to have negligible effect on the orientation of (15)N CSA tensor in accordance with recent theoretical predictions. Furthermore, it is demonstrated that the orientation of the (15)N CSA can be calculated accurately with much smaller basis sets than is needed to calculate the chemical shift, suggesting that the routine application of ab initio calculations to the determination of (15)N CSA tensor orientations in large biomolecules might be possible.

Entities:  

Mesh:

Substances:

Year:  2001        PMID: 11456625     DOI: 10.1021/ja001980q

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  28 in total

1.  Triple quantum decoherence under multiple refocusing: slow correlated chemical shift modulations of C' and N nuclei in proteins.

Authors:  Julien Wist; Dominique Frueh; Joel R Tolman; Geoffrey Bodenhausen
Journal:  J Biomol NMR       Date:  2004-03       Impact factor: 2.835

2.  Evaluation of the influence of anisotropic indirect nuclear spin-spin coupling tensors on effective residual dipolar couplings for model peptides.

Authors:  David L Bryce; Roderick E Wasylishen
Journal:  J Biomol NMR       Date:  2003-01       Impact factor: 2.835

Review 3.  Recent developments in solid-state magic-angle spinning, nuclear magnetic resonance of fully and significantly isotopically labelled peptides and proteins.

Authors:  Suzana K Straus
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-06-29       Impact factor: 6.237

4.  Solid-state NMR and density functional theory studies of ionization states of thiamin.

Authors:  Sivakumar Paramasivam; Anand Balakrishnan; Olga Dmitrenko; Amy Godert; Tadhg P Begley; Frank Jordan; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2010-12-22       Impact factor: 2.991

5.  Polymorphs and hydrates of acyclovir.

Authors:  Katie M Lutker; Rosalynn Quiñones; Jiadi Xu; Ayyalusamy Ramamoorthy; Adam J Matzger
Journal:  J Pharm Sci       Date:  2010-11-04       Impact factor: 3.534

6.  Transmembrane helix uniformity examined by spectral mapping of torsion angles.

Authors:  Richard C Page; Sanguk Kim; Timothy A Cross
Journal:  Structure       Date:  2008-05       Impact factor: 5.006

7.  Determination of 15N chemical shift anisotropy from a membrane-bound protein by NMR spectroscopy.

Authors:  Manoj Kumar Pandey; Subramanian Vivekanandan; Shivani Ahuja; Kumar Pichumani; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Phys Chem B       Date:  2012-06-04       Impact factor: 2.991

8.  Determination of accurate backbone chemical shift tensors in microcrystalline proteins by integrating MAS NMR and QM/MM.

Authors:  Matthew Fritz; Caitlin M Quinn; Mingzhang Wang; Guangjin Hou; Xingyu Lu; Leonardus M I Koharudin; Jochem Struppe; David A Case; Tatyana Polenova; Angela M Gronenborn
Journal:  Phys Chem Chem Phys       Date:  2018-04-04       Impact factor: 3.676

9.  Backbone amide 15N chemical shift tensors report on hydrogen bonding interactions in proteins: A magic angle spinning NMR study.

Authors:  Sivakumar Paramasivam; Angela M Gronenborn; Tatyana Polenova
Journal:  Solid State Nucl Magn Reson       Date:  2018-03-15       Impact factor: 2.293

10.  Influence of the O-phosphorylation of serine, threonine and tyrosine in proteins on the amidic ¹⁵N chemical shielding anisotropy tensors.

Authors:  Jiří Emmer; Andrea Vavrinská; Vladimír Sychrovský; Ladislav Benda; Zdeněk Kříž; Jaroslav Koča; Rolf Boelens; Vladimír Sklenář; Lukáš Trantírek
Journal:  J Biomol NMR       Date:  2012-12-01       Impact factor: 2.835

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.