Literature DB >> 15189867

Tilt angles of transmembrane model peptides in oriented and non-oriented lipid bilayers as determined by 2H solid-state NMR.

Erik Strandberg1, Suat Ozdirekcan, Dirk T S Rijkers, Patrick C A van der Wel, Roger E Koeppe, Rob M J Liskamp, J Antoinette Killian.   

Abstract

Solid-state NMR methods employing (2)H NMR and geometric analysis of labeled alanines (GALA) were used to study the structure and orientation of the transmembrane alpha-helical peptide acetyl-GWW(LA)(8)LWWA-amide (WALP23) in phosphatidylcholine (PC) bilayers of varying thickness. In all lipids the peptide was found to adopt a transmembrane alpha-helical conformation. A small tilt angle of 4.5 degrees was observed in di-18:1-PC, which has a hydrophobic bilayer thickness that approximately matches the hydrophobic length of the peptide. This tilt angle increased slightly but systematically with increasing positive mismatch to 8.2 degrees in di-C12:0-PC, the shortest lipid used. This small increase in tilt angle is insufficient to significantly change the effective hydrophobic length of the peptide and thereby to compensate for the increasing hydrophobic mismatch, suggesting that tilt of these peptides in a lipid bilayer is energetically unfavorable. The tilt and also the orientation around the peptide axis were found to be very similar to the values previously reported for a shorter WALP19 peptide (GWW(LA)(6)LWWA). As also observed in this previous study, the peptide rotates rapidly around the bilayer normal, but not around its helix axis. Here we show that these properties allow application of the GALA method not only to macroscopically aligned samples but also to randomly oriented samples, which has important practical advantages. A minimum of four labeled alanine residues in the hydrophobic transmembrane sequence was found to be required to obtain accurate tilt values using the GALA method.

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Year:  2004        PMID: 15189867      PMCID: PMC1304272          DOI: 10.1529/biophysj.103.035402

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  40 in total

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Journal:  Biochemistry       Date:  2003-04-08       Impact factor: 3.162

2.  Organization of model helical peptides in lipid bilayers: insight into the behavior of single-span protein transmembrane domains.

Authors:  Simon Sharpe; Kathryn R Barber; Chris W M Grant; David Goodyear; Michael R Morrow
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4.  Methods for studying transmembrane peptides in bicelles: consequences of hydrophobic mismatch and peptide sequence.

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5.  Lipid dependence of membrane anchoring properties and snorkeling behavior of aromatic and charged residues in transmembrane peptides.

Authors:  Erik Strandberg; Sven Morein; Dirk T S Rijkers; Rob M J Liskamp; Patrick C A van der Wel; J Antoinette Killian
Journal:  Biochemistry       Date:  2002-06-11       Impact factor: 3.162

6.  Cumulative effects of amino acid substitutions and hydrophobic mismatch upon the transmembrane stability and conformation of hydrophobic alpha-helices.

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Journal:  Biochemistry       Date:  2003-03-25       Impact factor: 3.162

7.  Interfacial anchor properties of tryptophan residues in transmembrane peptides can dominate over hydrophobic matching effects in peptide-lipid interactions.

Authors:  Maurits R R de Planque; Boyan B Bonev; Jeroen A A Demmers; Denise V Greathouse; Roger E Koeppe; Frances Separovic; Anthony Watts; J Antoinette Killian
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8.  Structure of the coat protein in fd filamentous bacteriophage particles determined by solid-state NMR spectroscopy.

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9.  Hydrophobic mismatch between helices and lipid bilayers.

Authors:  Thomas M Weiss; Patrick C A van der Wel; J Antoinette Killian; Roger E Koeppe; Huey W Huang
Journal:  Biophys J       Date:  2003-01       Impact factor: 4.033

10.  Three-dimensional structure of the channel-forming trans-membrane domain of virus protein "u" (Vpu) from HIV-1.

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  79 in total

1.  Irregular structure of the HIV fusion peptide in membranes demonstrated by solid-state NMR and MD simulations.

Authors:  Dorit Grasnick; Ulrich Sternberg; Erik Strandberg; Parvesh Wadhwani; Anne S Ulrich
Journal:  Eur Biophys J       Date:  2011-01-28       Impact factor: 1.733

2.  Interpretation of 2H-NMR experiments on the orientation of the transmembrane helix WALP23 by computer simulations.

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4.  Order parameters of a transmembrane helix in a fluid bilayer: case study of a WALP peptide.

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5.  Studies on viral fusion peptides: the distribution of lipophilic and electrostatic potential over the peptide determines the angle of insertion into a membrane.

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Review 6.  Helical membrane protein conformations and their environment.

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Journal:  Eur Biophys J       Date:  2013-09-01       Impact factor: 1.733

7.  Probing the lipid-protein interface using model transmembrane peptides with a covalently linked acyl chain.

Authors:  Thomas K M Nyholm; Bianca van Duyl; Dirk T S Rijkers; Rob M J Liskamp; J Antoinette Killian
Journal:  Biophys J       Date:  2011-10-19       Impact factor: 4.033

8.  Proton-evolved local-field solid-state NMR studies of cytochrome b5 embedded in bicelles, revealing both structural and dynamical information.

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Journal:  J Am Chem Soc       Date:  2010-04-28       Impact factor: 15.419

9.  Accommodation of a central arginine in a transmembrane peptide by changing the placement of anchor residues.

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10.  Dynamic Heterogeneous Dielectric Generalized Born (DHDGB): An implicit membrane model with a dynamically varying bilayer thickness.

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