Literature DB >> 12044149

Lipid dependence of membrane anchoring properties and snorkeling behavior of aromatic and charged residues in transmembrane peptides.

Erik Strandberg1, Sven Morein, Dirk T S Rijkers, Rob M J Liskamp, Patrick C A van der Wel, J Antoinette Killian.   

Abstract

31P NMR spectroscopy was used to investigate the effects of transmembrane alpha-helical peptides with different flanking residues on the phase behavior of phosphatidylethanolamine and phosphatidylethanolamine/phosphatidylglycerol (molar ratio 7:3) model membranes. It was found that tryptophan-flanked (WALP) peptides and lysine-flanked (KALP) peptides both promote formation of nonlamellar phases in these lipid systems in a mismatch-dependent manner. Based on this mismatch dependence, it was concluded that the effective hydrophobic length of KALP peptides is considerably shorter than that of the corresponding WALP peptides. Peptides with other positively charged residues showed very similar effects as KALP. The results suggest that the peptides have a well-defined effective hydrophobic length, which is different for charged and aromatic flanking residues, but which is independent of the precise chemical nature of the side chain. Strikingly, the effective length of KALP peptides in the lipid systems investigated here is much smaller than that previously found for the same peptides in phosphatidylcholine. This suggests that snorkeling of lysine side chains, as proposed to occur in phosphatidylcholine, does not occur in lipid systems that are prone to form nonlamellar phases by themselves. This suggestion was supported by using peptides with shortened lysine side chains and by investigating the effects of mixtures of WALP and KALP peptides. The lipid dependency of the snorkeling behavior is explained by considering the free energy cost of snorkeling in relation to the free energy cost of the formation of nonlamellar phases.

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Year:  2002        PMID: 12044149     DOI: 10.1021/bi012047i

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  43 in total

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Authors:  Changlin Tian; Philip Fei Gao; Lawrence H Pinto; Robert A Lamb; Timothy A Cross
Journal:  Protein Sci       Date:  2003-11       Impact factor: 6.725

2.  Analysis of side-chain rotamers in transmembrane proteins.

Authors:  Aaron K Chamberlain; James U Bowie
Journal:  Biophys J       Date:  2004-08-31       Impact factor: 4.033

3.  Transmembrane peptides influence the affinity of sterols for phospholipid bilayers.

Authors:  Joel H Nyström; Max Lönnfors; Thomas K M Nyholm
Journal:  Biophys J       Date:  2010-07-21       Impact factor: 4.033

4.  Design of amphiphilic protein maquettes: controlling assembly, membrane insertion, and cofactor interactions.

Authors:  Bohdana M Discher; Dror Noy; Joseph Strzalka; Shixin Ye; Christopher C Moser; James D Lear; J Kent Blasie; P Leslie Dutton
Journal:  Biochemistry       Date:  2005-09-20       Impact factor: 3.162

5.  Probing the lipid-protein interface using model transmembrane peptides with a covalently linked acyl chain.

Authors:  Thomas K M Nyholm; Bianca van Duyl; Dirk T S Rijkers; Rob M J Liskamp; J Antoinette Killian
Journal:  Biophys J       Date:  2011-10-19       Impact factor: 4.033

6.  Probing membrane protein orientation and structure using fast magic-angle-spinning solid-state NMR.

Authors:  O C Andronesi; J R Pfeifer; L Al-Momani; S Ozdirekcan; D T S Rijkers; B Angerstein; S Luca; U Koert; J A Killian; M Baldus
Journal:  J Biomol NMR       Date:  2004-11       Impact factor: 2.835

7.  Evaluating tilt angles of membrane-associated helices: comparison of computational and NMR techniques.

Authors:  Martin B Ulmschneider; Mark S P Sansom; Alfredo Di Nola
Journal:  Biophys J       Date:  2005-12-09       Impact factor: 4.033

8.  Redesigning channel-forming peptides: amino acid substitutions that enhance rates of supramolecular self-assembly and raise ion transport activity.

Authors:  Lalida P Shank; James R Broughman; Wade Takeguchi; Gabriel Cook; Ashley S Robbins; Lindsey Hahn; Gary Radke; Takeo Iwamoto; Bruce D Schultz; John M Tomich
Journal:  Biophys J       Date:  2005-12-30       Impact factor: 4.033

9.  Backbone structure of a small helical integral membrane protein: A unique structural characterization.

Authors:  Richard C Page; Sangwon Lee; Jacob D Moore; Stanley J Opella; Timothy A Cross
Journal:  Protein Sci       Date:  2009-01       Impact factor: 6.725

10.  Molecular dynamics simulation of transmembrane polypeptide orientational fluctuations.

Authors:  David J Goodyear; Simon Sharpe; Chris W M Grant; Michael R Morrow
Journal:  Biophys J       Date:  2004-10-15       Impact factor: 4.033

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