Literature DB >> 12667085

Molecular dynamics of 1-palmitoyl-2-oleoylphosphatidylcholine membranes containing transmembrane alpha-helical peptides with alternating leucine and alanine residues.

Witold K Subczynski1, Marta Pasenkiewicz-Gierula, Ronald N McElhaney, James S Hyde, Akihiro Kusumi.   

Abstract

The effects of the transmembrane alpha-helical peptide Ac-K(2)(LA)(12)K(2)-amide [(LA)(12)] on the molecular organization and dynamics of 1-palmitoyl-2-oleoylphosphatidylcholine (POPC) membranes were investigated using conventional and saturation-recovery EPR observations of phosphatidylcholine spin labels, and the results were compared with our earlier, similar study of Ac-K(2)L(24)K(2)-amide (L(24)) [Subczynski, W. K., Lewis, R. N. A. H., McElhaney, R. N., Hodges, R. S., Hyde, J. S., and Kusumi, A. (1998) Biochemistry 37, 3156-3164]. At peptide-to-POPC ratios between 1/10 and 1/40, both methods (covering a time scale of 100 ps-10 micros) detect the presence of a single homogeneous membrane environment for both peptides, suggesting that these peptides are both well dispersed and that POPC is exchanging rapidly between the boundary and the bulk domains. The local diffusion-solubility product of oxygen molecules (oxygen transport parameter) in the membrane, studied by saturation-recovery EPR, decreases by a factor of about 2 by including 10 mol % (LA)(12) whereas incorporating L(24) has practically no effect. (LA)(12) increases the alkyl chain order of POPC more than L(24). L(24) increases hydrophobicity (decreases the degree of water penetration into the hydrophobic region of the membrane) more than does (LA)(12). We ascribe the much stronger effects of (LA)(12) on membrane order and dynamics to the increased roughness of its hydrophobic surface and also to the increased motional freedom of its leucine side chains. In L(24), the leucine side chains are packed tightly, giving a smooth hydrophobic surface. In (LA)(12), they are separated by the small methyl groups of the alanine side chains, giving them additional motional freedom and the ability to protrude between the phospholipid hydrocarbon chains. The frequency of gauche-trans isomerization of hydrocarbon chains and concentration of vacant pockets (voids) in the lipid bilayer are thus reduced, which decreases oxygen transport. This explanation was confirmed by calculating the orientational order of leucine side chains in (LA)(12) and L(24) from molecular dynamics simulation studies.

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Year:  2003        PMID: 12667085     DOI: 10.1021/bi020636y

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  23 in total

1.  Theoretical study of structural changes caused by applying mechanical strain on peptide L24.

Authors:  Miroslav Krajčí; Ján Urban; Pavel Mach
Journal:  J Mol Model       Date:  2010-05-12       Impact factor: 1.810

2.  Probing the lipid-protein interface using model transmembrane peptides with a covalently linked acyl chain.

Authors:  Thomas K M Nyholm; Bianca van Duyl; Dirk T S Rijkers; Rob M J Liskamp; J Antoinette Killian
Journal:  Biophys J       Date:  2011-10-19       Impact factor: 4.033

3.  Molecular dynamics simulations of model trans-membrane peptides in lipid bilayers: a systematic investigation of hydrophobic mismatch.

Authors:  Senthil K Kandasamy; Ronald G Larson
Journal:  Biophys J       Date:  2006-01-20       Impact factor: 4.033

Review 4.  Functions of cholesterol and the cholesterol bilayer domain specific to the fiber-cell plasma membrane of the eye lens.

Authors:  Witold K Subczynski; Marija Raguz; Justyna Widomska; Laxman Mainali; Alexey Konovalov
Journal:  J Membr Biol       Date:  2011-12-30       Impact factor: 1.843

5.  Phases and domains in sphingomyelin-cholesterol membranes: structure and properties using EPR spin-labeling methods.

Authors:  Laxman Mainali; Marija Raguz; Witold K Subczynski
Journal:  Eur Biophys J       Date:  2011-10-28       Impact factor: 1.733

6.  Studying lipid organization in biological membranes using liposomes and EPR spin labeling.

Authors:  Witold K Subczynski; Marija Raguz; Justyna Widomska
Journal:  Methods Mol Biol       Date:  2010

7.  Physical properties of the lipid bilayer membrane made of cortical and nuclear bovine lens lipids: EPR spin-labeling studies.

Authors:  Marija Raguz; Justyna Widomska; James Dillon; Elizabeth R Gaillard; Witold K Subczynski
Journal:  Biochim Biophys Acta       Date:  2009-09-15

8.  Physical properties of the lipid bilayer membrane made of calf lens lipids: EPR spin labeling studies.

Authors:  Justyna Widomska; Marija Raguz; James Dillon; Elizabeth R Gaillard; Witold K Subczynski
Journal:  Biochim Biophys Acta       Date:  2007-03-20

9.  Phase behavior and domain size in sphingomyelin-containing lipid bilayers.

Authors:  Robin S Petruzielo; Frederick A Heberle; Paul Drazba; John Katsaras; Gerald W Feigenson
Journal:  Biochim Biophys Acta       Date:  2013-01-18

10.  Effect of variations in the structure of a polyleucine-based alpha-helical transmembrane peptide on its interaction with phosphatidylethanolamine Bilayers.

Authors:  Feng Liu; Ruthven N A H Lewis; Robert S Hodges; Ronald N McElhaney
Journal:  Biophys J       Date:  2004-10       Impact factor: 4.033

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