Literature DB >> 12080125

Organization of model helical peptides in lipid bilayers: insight into the behavior of single-span protein transmembrane domains.

Simon Sharpe1, Kathryn R Barber, Chris W M Grant, David Goodyear, Michael R Morrow.   

Abstract

Selectively deuterated transmembrane peptides comprising alternating leucine-alanine subunits were examined in fluid bilayer membranes by solid-state nuclear magnetic resonance (NMR) spectroscopy in an effort to gain insight into the behavior of membrane proteins. Two groups of peptides were studied: 21-mers having a 17-amino-acid hydrophobic domain calculated to be close in length to the hydrophobic thickness of 1-palmitoyl-2-oleoyl phosphatidylcholine and 26-mers having a 22-amino-acid hydrophobic domain calculated to exceed the membrane hydrophobic thickness. (2)H NMR spectral features similar to ones observed for transmembrane peptides from single-span receptors of higher animal cells were identified which apparently correspond to effectively monomeric peptide. Spectral observations suggested significant distortion of the transmembrane alpha-helix, and/or potential for restriction of rotation about the tilted helix long axis for even simple peptides. Quadrupole splittings arising from the 26-mer were consistent with greater peptide "tilt" than were those of the analogous 21-mer. Quadrupole splittings associated with monomeric peptide were relatively insensitive to concentration and temperature over the range studied, indicating stable average conformations, and a well-ordered rotation axis. At high peptide concentration (6 mol% relative to phospholipid) it appeared that the peptide predicted to be longer than the membrane thickness had a particular tendency toward reversible peptide-peptide interactions occurring on a timescale comparable with or faster than approximately 10(-5) s. This interaction may be direct or lipid-mediated and was manifest as line broadening. Peptide rotational diffusion rates within the membrane, calculated from quadrupolar relaxation times, T(2e), were consistent with such interactions. In the case of the peptide predicted to be equal to the membrane thickness, at low peptide concentration spectral lineshape indicated the additional presence of a population of peptide having rotational motion that was restricted on a timescale of 10(-5) s.

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Year:  2002        PMID: 12080125      PMCID: PMC1302152          DOI: 10.1016/S0006-3495(02)75174-6

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  50 in total

1.  Imaging membrane protein helical wheels.

Authors:  J Wang; J Denny; C Tian; S Kim; Y Mo; F Kovacs; Z Song; K Nishimura; Z Gan; R Fu; J R Quine; T A Cross
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2.  Control of the transmembrane orientation and interhelical interactions within membranes by hydrophobic helix length.

Authors:  J Ren; S Lew; J Wang; E London
Journal:  Biochemistry       Date:  1999-05-04       Impact factor: 3.162

Review 3.  How proteins adapt to a membrane-water interface.

Authors:  J A Killian; G von Heijne
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Review 4.  Theoretical analysis of protein organization in lipid membranes.

Authors:  T Gil; J H Ipsen; O G Mouritsen; M C Sabra; M M Sperotto; M J Zuckermann
Journal:  Biochim Biophys Acta       Date:  1998-11-10

5.  Transmembrane helix structure, dynamics, and interactions: multi-nanosecond molecular dynamics simulations.

Authors:  L Shen; D Bassolino; T Stouch
Journal:  Biophys J       Date:  1997-07       Impact factor: 4.033

Review 6.  Models of lipid-protein interactions in membranes.

Authors:  O G Mouritsen; M Bloom
Journal:  Annu Rev Biophys Biomol Struct       Date:  1993

7.  Helix to helix packing in proteins.

Authors:  C Chothia; M Levitt; D Richardson
Journal:  J Mol Biol       Date:  1981-01-05       Impact factor: 5.469

8.  Influence of transmembrane peptides on bilayers of phosphatidylcholines with different acyl chain lengths studied by solid-state NMR.

Authors:  T Byström; E Strandberg; F A Kovacs; T A Cross; G Lindblom
Journal:  Biochim Biophys Acta       Date:  2000-12-20

Review 9.  Hydrophobic mismatch between proteins and lipids in membranes.

Authors:  J A Killian
Journal:  Biochim Biophys Acta       Date:  1998-11-10

10.  Dynamic properties of the backbone of an integral membrane polypeptide measured by 2H-NMR.

Authors:  K P Pauls; A L MacKay; O Söderman; M Bloom; A K Tanjea; R S Hodges
Journal:  Eur Biophys J       Date:  1985       Impact factor: 1.733

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  16 in total

1.  Molecular dynamics simulations of model trans-membrane peptides in lipid bilayers: a systematic investigation of hydrophobic mismatch.

Authors:  Senthil K Kandasamy; Ronald G Larson
Journal:  Biophys J       Date:  2006-01-20       Impact factor: 4.033

2.  Orientation and dynamics of synthetic transbilayer polypeptides containing GpATM dimerization motifs.

Authors:  Mark C McDonald; Valerie Booth; Michael R Morrow
Journal:  Biophys J       Date:  2011-02-02       Impact factor: 4.033

3.  Solid-state NMR studies of a diverged microsomal amino-proximate delta12 desaturase peptide reveal causes of stability in bilayer: tyrosine anchoring and arginine snorkeling.

Authors:  William J Gibbons; Ethan S Karp; Nick A Cellar; Robert E Minto; Gary A Lorigan
Journal:  Biophys J       Date:  2005-12-02       Impact factor: 4.033

4.  Membrane-protein interactions in a generic coarse-grained model for lipid bilayers.

Authors:  Beate West; Frank L H Brown; Friederike Schmid
Journal:  Biophys J       Date:  2009-01       Impact factor: 4.033

5.  Simulation studies of protein-induced bilayer deformations, and lipid-induced protein tilting, on a mesoscopic model for lipid bilayers with embedded proteins.

Authors:  Maddalena Venturoli; Berend Smit; Maria Maddalena Sperotto
Journal:  Biophys J       Date:  2005-03       Impact factor: 4.033

6.  Molecular dynamics simulation of transmembrane polypeptide orientational fluctuations.

Authors:  David J Goodyear; Simon Sharpe; Chris W M Grant; Michael R Morrow
Journal:  Biophys J       Date:  2004-10-15       Impact factor: 4.033

7.  Phospholamban and its phosphorylated form interact differently with lipid bilayers: a 31P, 2H, and 13C solid-state NMR spectroscopic study.

Authors:  Shadi Abu-Baker; Gary A Lorigan
Journal:  Biochemistry       Date:  2006-11-07       Impact factor: 3.162

8.  Prediction, refinement, and persistency of transmembrane helix dimers in lipid bilayers using implicit and explicit solvent/lipid representations: microsecond molecular dynamics simulations of ErbB1/B2 and EphA1.

Authors:  Liqun Zhang; Alexander J Sodt; Richard M Venable; Richard W Pastor; Matthias Buck
Journal:  Proteins       Date:  2012-11-05

9.  Transmembrane peptide-induced lipid sorting and mechanism of Lalpha-to-inverted phase transition using coarse-grain molecular dynamics.

Authors:  Steve O Nielsen; Carlos F Lopez; Ivaylo Ivanov; Preston B Moore; John C Shelley; Michael L Klein
Journal:  Biophys J       Date:  2004-10       Impact factor: 4.033

10.  Role of side-chain conformational entropy in transmembrane helix dimerization of glycophorin A.

Authors:  Wei Liu; Evan Crocker; David J Siminovitch; Steven O Smith
Journal:  Biophys J       Date:  2003-02       Impact factor: 4.033

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