Literature DB >> 20441750

Order parameters of a transmembrane helix in a fluid bilayer: case study of a WALP peptide.

Andrea Holt1, Léa Rougier, Valérie Réat, Franck Jolibois, Olivier Saurel, Jerzy Czaplicki, J Antoinette Killian, Alain Milon.   

Abstract

A new solid-state NMR-based strategy is established for the precise and efficient analysis of orientation and dynamics of transmembrane peptides in fluid bilayers. For this purpose, several dynamically averaged anisotropic constraints, including (13)C and (15)N chemical shift anisotropies and (13)C-(15)N dipolar couplings, were determined from two different triple-isotope-labeled WALP23 peptides ((2)H, (13)C, and (15)N) and combined with previously published quadrupolar splittings of the same peptide. Chemical shift anisotropy tensor orientations were determined with quantum chemistry. The complete set of experimental constraints was analyzed using a generalized, four-parameter dynamic model of the peptide motion, including tilt and rotation angle and two associated order parameters. A tilt angle of 21 degrees was determined for WALP23 in dimyristoylphosphatidylcholine, which is much larger than the tilt angle of 5.5 degrees previously determined from (2)H NMR experiments. This approach provided a realistic value for the tilt angle of WALP23 peptide in the presence of hydrophobic mismatch, and can be applied to any transmembrane helical peptide. The influence of the experimental data set on the solution space is discussed, as are potential sources of error. Copyright (c) 2010 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20441750      PMCID: PMC2862159          DOI: 10.1016/j.bpj.2010.01.016

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  28 in total

1.  GOSA, a simulated annealing-based program for global optimization of nonlinear problems, also reveals transyears.

Authors:  Jerzy Czaplicki; Germaine Cornélissen; Franz Halberg
Journal:  J Appl Biomed       Date:  2006-06       Impact factor: 1.797

Review 2.  Structure, topology, and dynamics of membrane peptides and proteins from solid-state NMR spectroscopy.

Authors:  Mei Hong
Journal:  J Phys Chem B       Date:  2007-08-09       Impact factor: 2.991

3.  On the orientation of a designed transmembrane peptide: toward the right tilt angle?

Authors:  Suat Ozdirekcan; Catherine Etchebest; J Antoinette Killian; Patrick F J Fuchs
Journal:  J Am Chem Soc       Date:  2007-11-15       Impact factor: 15.419

4.  Orientation and dynamics of peptides in membranes calculated from 2H-NMR data.

Authors:  Erik Strandberg; Santi Esteban-Martín; Jesús Salgado; Anne S Ulrich
Journal:  Biophys J       Date:  2009-04-22       Impact factor: 4.033

Review 5.  How protein transmembrane segments sense the lipid environment.

Authors:  Thomas K M Nyholm; Suat Ozdirekcan; J Antoinette Killian
Journal:  Biochemistry       Date:  2007-02-13       Impact factor: 3.162

Review 6.  Orientation and dynamics of transmembrane peptides: the power of simple models.

Authors:  Andrea Holt; J Antoinette Killian
Journal:  Eur Biophys J       Date:  2009-12-18       Impact factor: 1.733

7.  Orientation and dynamics of an antimicrobial peptide in the lipid bilayer by solid-state NMR spectroscopy.

Authors:  S Yamaguchi; D Huster; A Waring; R I Lehrer; W Kearney; B F Tack; M Hong
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

8.  Molecular organization in striated domains induced by transmembrane alpha-helical peptides in dipalmitoyl phosphatidylcholine bilayers.

Authors:  Emma Sparr; Dragomir N Ganchev; Margot M E Snel; Anja N J A Ridder; Loes M J Kroon-Batenburg; Vladimir Chupin; Dirk T S Rijkers; J Antoinette Killian; Ben de Kruijff
Journal:  Biochemistry       Date:  2005-01-11       Impact factor: 3.162

9.  Helical distortion in tryptophan- and lysine-anchored membrane-spanning alpha-helices as a function of hydrophobic mismatch: a solid-state deuterium NMR investigation using the geometric analysis of labeled alanines method.

Authors:  Anna E Daily; Denise V Greathouse; Patrick C A van der Wel; Roger E Koeppe
Journal:  Biophys J       Date:  2007-09-07       Impact factor: 4.033

10.  Comparison of "Polarization inversion with spin exchange at magic angle" and "geometric analysis of labeled alanines" methods for transmembrane helix alignment.

Authors:  Vitaly V Vostrikov; Christopher V Grant; Anna E Daily; Stanley J Opella; Roger E Koeppe
Journal:  J Am Chem Soc       Date:  2008-09-03       Impact factor: 15.419

View more
  21 in total

1.  Interpretation of 2H-NMR experiments on the orientation of the transmembrane helix WALP23 by computer simulations.

Authors:  Luca Monticelli; D Peter Tieleman; Patrick F J Fuchs
Journal:  Biophys J       Date:  2010-09-08       Impact factor: 4.033

2.  Probing the lipid-protein interface using model transmembrane peptides with a covalently linked acyl chain.

Authors:  Thomas K M Nyholm; Bianca van Duyl; Dirk T S Rijkers; Rob M J Liskamp; J Antoinette Killian
Journal:  Biophys J       Date:  2011-10-19       Impact factor: 4.033

3.  Orientation and dynamics of synthetic transbilayer polypeptides containing GpATM dimerization motifs.

Authors:  Mark C McDonald; Valerie Booth; Michael R Morrow
Journal:  Biophys J       Date:  2011-02-02       Impact factor: 4.033

4.  Transmembrane helix orientation and dynamics: insights from ensemble dynamics with solid-state NMR observables.

Authors:  Sunhwan Jo; Wonpil Im
Journal:  Biophys J       Date:  2011-06-22       Impact factor: 4.033

5.  Solid-state NMR ensemble dynamics as a mediator between experiment and simulation.

Authors:  Taehoon Kim; Sunhwan Jo; Wonpil Im
Journal:  Biophys J       Date:  2011-06-22       Impact factor: 4.033

6.  Tyrosine replacing tryptophan as an anchor in GWALP peptides.

Authors:  Nicholas J Gleason; Vitaly V Vostrikov; Denise V Greathouse; Christopher V Grant; Stanley J Opella; Roger E Koeppe
Journal:  Biochemistry       Date:  2012-03-05       Impact factor: 3.162

7.  Properties of membrane-incorporated WALP peptides that are anchored on only one end.

Authors:  Johanna M Rankenberg; Vitaly V Vostrikov; Denise V Greathouse; Christopher V Grant; Stanley J Opella; Roger E Koeppe
Journal:  Biochemistry       Date:  2012-12-03       Impact factor: 3.162

8.  Supramolecular structure of membrane-associated polypeptides by combining solid-state NMR and molecular dynamics simulations.

Authors:  Markus Weingarth; Christian Ader; Adrien S J Melquiond; Deepak Nand; Olaf Pongs; Stefan Becker; Alexandre M J J Bonvin; Marc Baldus
Journal:  Biophys J       Date:  2012-07-03       Impact factor: 4.033

9.  Canonical azimuthal rotations and flanking residues constrain the orientation of transmembrane helices.

Authors:  Orlando L Sánchez-Muñoz; Erik Strandberg; E Esteban-Martín; Stephan L Grage; Anne S Ulrich; Jesús Salgado
Journal:  Biophys J       Date:  2013-04-02       Impact factor: 4.033

10.  Single tryptophan and tyrosine comparisons in the N-terminal and C-terminal interface regions of transmembrane GWALP peptides.

Authors:  Nicholas J Gleason; Denise V Greathouse; Christopher V Grant; Stanley J Opella; Roger E Koeppe
Journal:  J Phys Chem B       Date:  2013-10-29       Impact factor: 2.991

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.