Literature DB >> 15161960

Ligation activity of fragmented ribozymes in frozen solution: implications for the RNA world.

Alexander V Vlassov1, Brian H Johnston, Laura F Landweber, Sergei A Kazakov.   

Abstract

A vexing difficulty of the RNA world hypothesis is how RNA molecules of significant complexity could ever have evolved given their susceptibility to degradation. One way degradation might have been reduced is through low temperature. Here we report that truncated and fragmented derivatives of the hairpin ribozyme can catalyze ligation of a wide variety of RNA molecules to a given sequence in frozen solution despite having little or no activity under standard solution conditions. These results suggest that complex RNAs could have evolved in freezing environments on the early earth and perhaps elsewhere.

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Year:  2004        PMID: 15161960      PMCID: PMC419604          DOI: 10.1093/nar/gkh601

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  36 in total

1.  Structural basis for the guanosine requirement of the hairpin ribozyme.

Authors:  R Pinard; D Lambert; N G Walter; J E Heckman; F Major; J M Burke
Journal:  Biochemistry       Date:  1999-12-07       Impact factor: 3.162

Review 2.  Ribozymes--why so many, why so few?

Authors:  F J Schmidt
Journal:  Mol Cells       Date:  1999-10-31       Impact factor: 5.034

3.  Functional involvement of G8 in the hairpin ribozyme cleavage mechanism.

Authors:  R Pinard; K J Hampel; J E Heckman; D Lambert; P A Chan; F Major; J M Burke
Journal:  EMBO J       Date:  2001-11-15       Impact factor: 11.598

4.  The internal equilibrium of the hairpin ribozyme: temperature, ion and pH effects.

Authors:  S M Nesbitt; H A Erlacher; M J Fedor
Journal:  J Mol Biol       Date:  1999-03-05       Impact factor: 5.469

5.  The stability of the RNA bases: implications for the origin of life.

Authors:  M Levy; S L Miller
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-07       Impact factor: 11.205

Review 6.  The hairpin ribozyme: structure, assembly and catalysis.

Authors:  N G Walter; J M Burke
Journal:  Curr Opin Chem Biol       Date:  1998-02       Impact factor: 8.822

7.  Emergence of a dual-catalytic RNA with metal-specific cleavage and ligase activities: the spandrels of RNA evolution.

Authors:  L F Landweber; I D Pokrovskaya
Journal:  Proc Natl Acad Sci U S A       Date:  1999-01-05       Impact factor: 11.205

8.  Mg2+-independent hairpin ribozyme catalysis in hydrated RNA films.

Authors:  A A Seyhan; J M Burke
Journal:  RNA       Date:  2000-02       Impact factor: 4.942

Review 9.  Structure and function of the hairpin ribozyme.

Authors:  M J Fedor
Journal:  J Mol Biol       Date:  2000-03-24       Impact factor: 5.469

10.  Hairpin ribozyme cleavage catalyzed by aminoglycoside antibiotics and the polyamine spermine in the absence of metal ions.

Authors:  D J Earnshaw; M J Gait
Journal:  Nucleic Acids Res       Date:  1998-12-15       Impact factor: 16.971

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  32 in total

Review 1.  Getting past the RNA world: the initial Darwinian ancestor.

Authors:  Michael Yarus
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-04-01       Impact factor: 10.005

Review 2.  The RNA world on ice: a new scenario for the emergence of RNA information.

Authors:  Alexander V Vlassov; Sergei A Kazakov; Brian H Johnston; Laura F Landweber
Journal:  J Mol Evol       Date:  2005-07-13       Impact factor: 2.395

3.  RNA catalysis in frozen solutions.

Authors:  A V Vlassov; B H Johnston; L F Landweber; S A Kazakov
Journal:  Dokl Biochem Biophys       Date:  2005 May-Jun       Impact factor: 0.788

4.  Modular evolution and increase of functional complexity in replicating RNA molecules.

Authors:  Susanna C Manrubia; Carlos Briones
Journal:  RNA       Date:  2006-11-14       Impact factor: 4.942

5.  Nucleotide synthetase ribozymes may have emerged first in the RNA world.

Authors:  Wentao Ma; Chunwu Yu; Wentao Zhang; Jiming Hu
Journal:  RNA       Date:  2007-09-18       Impact factor: 4.942

6.  Ligation of the hairpin ribozyme in cis induced by freezing and dehydration.

Authors:  Sergei A Kazakov; Svetlana V Balatskaya; Brian H Johnston
Journal:  RNA       Date:  2006-03       Impact factor: 4.942

7.  The origin of modern terrestrial life.

Authors:  Patrick Forterre; Simonetta Gribaldo
Journal:  HFSP J       Date:  2007-07-25

8.  The dawn of the RNA World: toward functional complexity through ligation of random RNA oligomers.

Authors:  Carlos Briones; Michael Stich; Susanna C Manrubia
Journal:  RNA       Date:  2009-03-24       Impact factor: 4.942

9.  Conversion of stable RNA hairpin to a metastable dimer in frozen solution.

Authors:  Xueguang Sun; J Michael Li; Roger M Wartell
Journal:  RNA       Date:  2007-10-09       Impact factor: 4.942

Review 10.  The RNA World: molecular cooperation at the origins of life.

Authors:  Paul G Higgs; Niles Lehman
Journal:  Nat Rev Genet       Date:  2014-11-11       Impact factor: 53.242

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