Literature DB >> 9667918

The hairpin ribozyme: structure, assembly and catalysis.

N G Walter1, J M Burke.   

Abstract

Recent studies of the hairpin ribozyme have revealed a distinct catalytic mechanism for this small RNA motif. Inner-sphere coordinated metal ions are not required, as the inert metal ion complex cobalt hexammine promotes catalysis. Detailed kinetic analyses have defined rates of individual steps in the catalytic cycle. Functional group modification, NMR studies of subdomains and cross-linking experiments, in combination with computer modeling, have led to a proposal for domain interactions in the substrate-ribozyme complex.

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Year:  1998        PMID: 9667918     DOI: 10.1016/s1367-5931(98)80032-x

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  38 in total

Review 1.  Recent advances in the elucidation of the mechanisms of action of ribozymes.

Authors:  Y Takagi; M Warashina; W J Stec; K Yoshinari; K Taira
Journal:  Nucleic Acids Res       Date:  2001-05-01       Impact factor: 16.971

2.  RNA double cleavage by a hairpin-derived twin ribozyme.

Authors:  C Schmidt; R Welz; S Müller
Journal:  Nucleic Acids Res       Date:  2000-02-15       Impact factor: 16.971

3.  Functional involvement of G8 in the hairpin ribozyme cleavage mechanism.

Authors:  R Pinard; K J Hampel; J E Heckman; D Lambert; P A Chan; F Major; J M Burke
Journal:  EMBO J       Date:  2001-11-15       Impact factor: 11.598

4.  Intramolecular secondary structure rearrangement by the kissing interaction of the Neurospora VS ribozyme.

Authors:  A A Andersen; R A Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2001-06-26       Impact factor: 11.205

5.  X-ray crystallographic observation of "in-line" and "adjacent" conformations in a bulged self-cleaving RNA/DNA hybrid.

Authors:  V Tereshko; S T Wallace; N Usman; F E Wincott; M Egli
Journal:  RNA       Date:  2001-03       Impact factor: 4.942

Review 6.  The hairpin ribozyme. Discovery, mechanism, and development for gene therapy.

Authors:  R Shippy; R Lockner; M Farnsworth; A Hampel
Journal:  Mol Biotechnol       Date:  1999-08       Impact factor: 2.695

7.  Outersphere and innersphere coordinated metal ions in an aminoacyl-tRNA synthetase ribozyme.

Authors:  Hirohide Saito; Hiroaki Suga
Journal:  Nucleic Acids Res       Date:  2002-12-01       Impact factor: 16.971

Review 8.  Ribozyme speed limits.

Authors:  Gail Mitchell Emilsson; Shingo Nakamura; Adam Roth; Ronald R Breaker
Journal:  RNA       Date:  2003-08       Impact factor: 4.942

9.  Single-molecule transition-state analysis of RNA folding.

Authors:  Gregory Bokinsky; David Rueda; Vinod K Misra; Maria M Rhodes; Andrew Gordus; Hazen P Babcock; Nils G Walter; Xiaowei Zhuang
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-17       Impact factor: 11.205

10.  Single-molecule enzymology of RNA: essential functional groups impact catalysis from a distance.

Authors:  David Rueda; Gregory Bokinsky; Maria M Rhodes; Michael J Rust; Xiaowei Zhuang; Nils G Walter
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-24       Impact factor: 11.205

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