Literature DB >> 19318464

The dawn of the RNA World: toward functional complexity through ligation of random RNA oligomers.

Carlos Briones1, Michael Stich, Susanna C Manrubia.   

Abstract

A main unsolved problem in the RNA World scenario for the origin of life is how a template-dependent RNA polymerase ribozyme emerged from short RNA oligomers obtained by random polymerization on mineral surfaces. A number of computational studies have shown that the structural repertoire yielded by that process is dominated by topologically simple structures, notably hairpin-like ones. A fraction of these could display RNA ligase activity and catalyze the assembly of larger, eventually functional RNA molecules retaining their previous modular structure: molecular complexity increases but template replication is absent. This allows us to build up a stepwise model of ligation-based, modular evolution that could pave the way to the emergence of a ribozyme with RNA replicase activity, step at which information-driven Darwinian evolution would be triggered.

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Year:  2009        PMID: 19318464      PMCID: PMC2673073          DOI: 10.1261/rna.1488609

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  56 in total

1.  Tertiary structure stabilization promotes hairpin ribozyme ligation.

Authors:  M J Fedor
Journal:  Biochemistry       Date:  1999-08-24       Impact factor: 3.162

2.  The internal equilibrium of the hairpin ribozyme: temperature, ion and pH effects.

Authors:  S M Nesbitt; H A Erlacher; M J Fedor
Journal:  J Mol Biol       Date:  1999-03-05       Impact factor: 5.469

Review 3.  Catalysis in abiotic structured media: an approach to selective synthesis of biopolymers.

Authors:  P-A Monnard
Journal:  Cell Mol Life Sci       Date:  2005-03       Impact factor: 9.261

4.  Efficient RNA ligation by reverse-joined hairpin ribozymes and engineering of twin ribozymes consisting of conventional and reverse-joined hairpin ribozyme units.

Authors:  Sergei A Ivanov; Stéphanie Vauléon; Sabine Müller
Journal:  FEBS J       Date:  2005-09       Impact factor: 5.542

5.  In vitro RNA random pools are not structurally diverse: a computational analysis.

Authors:  Jana Gevertz; Hin Hark Gan; Tamar Schlick
Journal:  RNA       Date:  2005-06       Impact factor: 4.942

6.  Functional information and the emergence of biocomplexity.

Authors:  Robert M Hazen; Patrick L Griffin; James M Carothers; Jack W Szostak
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-09       Impact factor: 11.205

7.  Heterologous RNA replication enhancer stimulates in vitro RNA synthesis and template-switching by the carmovirus, but not by the tombusvirus, RNA-dependent RNA polymerase: implication for modular evolution of RNA viruses.

Authors:  Chi-Ping Cheng; Tadas Panavas; Guangxiang Luo; Peter D Nagy
Journal:  Virology       Date:  2005-10-10       Impact factor: 3.616

8.  Structurally complex and highly active RNA ligases derived from random RNA sequences.

Authors:  E H Ekland; J W Szostak; D P Bartel
Journal:  Science       Date:  1995-07-21       Impact factor: 47.728

9.  Montmorillonite catalysis of RNA oligomer formation in aqueous solution. A model for the prebiotic formation of RNA.

Authors:  J P Ferris; G Ertem
Journal:  J Am Chem Soc       Date:  1993       Impact factor: 15.419

10.  Modular RNA architecture revealed by computational analysis of existing pseudoknots and ribosomal RNAs.

Authors:  Samuela Pasquali; Hin Hark Gan; Tamar Schlick
Journal:  Nucleic Acids Res       Date:  2005-03-03       Impact factor: 16.971

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  37 in total

Review 1.  Rethinking quasispecies theory: From fittest type to cooperative consortia.

Authors:  Luis P Villarreal; Guenther Witzany
Journal:  World J Biol Chem       Date:  2013-11-26

2.  Comprehensive experimental fitness landscape and evolutionary network for small RNA.

Authors:  José I Jiménez; Ramon Xulvi-Brunet; Gregory W Campbell; Rebecca Turk-MacLeod; Irene A Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-26       Impact factor: 11.205

3.  Origin of self-replicating biopolymers: autocatalytic feedback can jump-start the RNA world.

Authors:  Meng Wu; Paul G Higgs
Journal:  J Mol Evol       Date:  2009-09-24       Impact factor: 2.395

4.  When Competing Viruses Unify: Evolution, Conservation, and Plasticity of Genetic Identities.

Authors:  Luis P Villarreal; Guenther Witzany
Journal:  J Mol Evol       Date:  2015-05-27       Impact factor: 2.395

5.  Mineral surfaces select for longer RNA molecules.

Authors:  Ryo Mizuuchi; Alex Blokhuis; Lena Vincent; Philippe Nghe; Niles Lehman; David Baum
Journal:  Chem Commun (Camb)       Date:  2019-02-12       Impact factor: 6.222

Review 6.  Pragmatic turn in biology: From biological molecules to genetic content operators.

Authors:  Guenther Witzany
Journal:  World J Biol Chem       Date:  2014-08-26

Review 7.  Sex in a test tube: testing the benefits of in vitro recombination.

Authors:  Diego Pesce; Niles Lehman; J Arjan G M de Visser
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-10-19       Impact factor: 6.237

8.  Exploration of RNA Sequence Space in the Absence of a Replicase.

Authors:  Madhan R Tirumalai; Quyen Tran; Maxim Paci; Dimple Chavan; Anuradha Marathe; George E Fox
Journal:  J Mol Evol       Date:  2018-05-11       Impact factor: 2.395

9.  From prelife to life: how chemical kinetics become evolutionary dynamics.

Authors:  Irene A Chen; Martin A Nowak
Journal:  Acc Chem Res       Date:  2012-02-15       Impact factor: 22.384

10.  Freeze-thaw cycles as drivers of complex ribozyme assembly.

Authors:  Hannes Mutschler; Aniela Wochner; Philipp Holliger
Journal:  Nat Chem       Date:  2015-05-04       Impact factor: 24.427

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