Literature DB >> 15082555

Molecular cytogenetic definition of the chicken genome: the first complete avian karyotype.

Julio S Masabanda1, Dave W Burt, Patricia C M O'Brien, Alain Vignal, Valerie Fillon, Philippa S Walsh, Helen Cox, Helen G Tempest, Jacqueline Smith, Felix Habermann, Michael Schmid, Yoichi Matsuda, Malcolm A Ferguson-Smith, Richard P M A Crooijmans, Martien A M Groenen, Darren K Griffin.   

Abstract

Chicken genome mapping is important for a range of scientific disciplines. The ability to distinguish chromosomes of the chicken and other birds is thus a priority. Here we describe the molecular cytogenetic characterization of each chicken chromosome using chromosome painting and mapping of individual clones by FISH. Where possible, we have assigned the chromosomes to known linkage groups. We propose, on the basis of size, that the NOR chromosome is approximately the size of chromosome 22; however, we suggest that its original assignment of 16 should be retained. We also suggest a definitive chromosome classification system and propose that the probes developed here will find wide utility in the fields of developmental biology, DT40 studies, agriculture, vertebrate genome organization, and comparative mapping of avian species.

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Year:  2004        PMID: 15082555      PMCID: PMC1470793          DOI: 10.1534/genetics.166.3.1367

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  36 in total

1.  The dynamics of chromosome evolution in birds and mammals.

Authors:  D W Burt; C Bruley; I C Dunn; C T Jones; A Ramage; A S Law; D R Morrice; I R Paton; J Smith; D Windsor; A Sazanov; R Fries; D Waddington
Journal:  Nature       Date:  1999-11-25       Impact factor: 49.962

2.  Micro- and macrochromosome paints generated by flow cytometry and microdissection: tools for mapping the chicken genome.

Authors:  D K Griffin; F Haberman; J Masabanda; P O'Brien; M Bagga; A Sazanov; J Smith; D W Burt; M Ferguson-Smith; J Wienberg
Journal:  Cytogenet Cell Genet       Date:  1999

3.  Reverse chromosome painting: a method for the rapid analysis of aberrant chromosomes in clinical cytogenetics.

Authors:  N P Carter; M A Ferguson-Smith; M T Perryman; H Telenius; A H Pelmear; M A Leversha; M T Glancy; S L Wood; K Cook; H M Dyson
Journal:  J Med Genet       Date:  1992-05       Impact factor: 6.318

4.  Degenerate oligonucleotide-primed PCR: general amplification of target DNA by a single degenerate primer.

Authors:  H Telenius; N P Carter; C E Bebb; M Nordenskjöld; B A Ponder; A Tunnacliffe
Journal:  Genomics       Date:  1992-07       Impact factor: 5.736

5.  Mapping of five members of the cyclin gene family on chicken chromosomes by FISH.

Authors:  J Masabanda; R Friedl; A Sazanov; J M Lahti; H Li; V J Kidd; R Fries
Journal:  Chromosome Res       Date:  1998-04       Impact factor: 5.239

6.  International system for standardized avian karyotypes (ISSAK): standardized banded karyotypes of the domestic fowl (Gallus domesticus).

Authors:  K Ladjali-Mohammedi; J J Bitgood; M Tixier-Boichard; F A Ponce De Leon
Journal:  Cytogenet Cell Genet       Date:  1999

7.  The chicken HPRT gene: a counter selectable marker for the DT40 cell line.

Authors:  T Fukagawa; N Hayward; J Yang; C Azzalin; D Griffin; A F Stewart; W Brown
Journal:  Nucleic Acids Res       Date:  1999-05-01       Impact factor: 16.971

8.  Targeting of marker loci to chicken chromosome 16 by representational difference analysis.

Authors:  H M Wain; A A Toye; S Hughes; N Bumstead
Journal:  Anim Genet       Date:  1998-12       Impact factor: 3.169

Review 9.  Genetic markers and their application in poultry breeding.

Authors:  M G Emara; H Kim
Journal:  Poult Sci       Date:  2003-06       Impact factor: 3.352

10.  An extended chicken karyotype, including the NOR chromosome.

Authors:  H Auer; B Mayr; M Lambrou; W Schleger
Journal:  Cytogenet Cell Genet       Date:  1987
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  45 in total

1.  Chickens possess centromeres with both extended tandem repeats and short non-tandem-repetitive sequences.

Authors:  Wei-Hao Shang; Tetsuya Hori; Atsushi Toyoda; Jun Kato; Kris Popendorf; Yasubumi Sakakibara; Asao Fujiyama; Tatsuo Fukagawa
Journal:  Genome Res       Date:  2010-06-09       Impact factor: 9.043

2.  Development of a gene-based radiation hybrid map of chicken Chromosome 7 and comparison to human and mouse.

Authors:  Mireille Morisson; Carine Jiguet-Jiglaire; Sophie Leroux; Thomas Faraut; Suzanne Bardes; Katia Feve; Carine Genet; Frédérique Pitel; Denis Milan; Alain Vignal
Journal:  Mamm Genome       Date:  2004-09       Impact factor: 2.957

3.  Foreword. Comparative cytogenetics in the genomics era: cytogenomics comes of age.

Authors:  Gauthier Dobigny; Fengtang Yang
Journal:  Chromosome Res       Date:  2008       Impact factor: 5.239

4.  Novel tools for characterising inter and intra chromosomal rearrangements in avian microchromosomes.

Authors:  Pamela E Lithgow; Rebecca O'Connor; Deborah Smith; Gothami Fonseka; Abdullah Al Mutery; Claudia Rathje; Richard Frodsham; Patricia O'Brien; Fumio Kasai; Malcolm A Ferguson-Smith; Benjamin M Skinner; Darren K Griffin
Journal:  Chromosome Res       Date:  2014-04       Impact factor: 5.239

5.  New high copy tandem repeat in the content of the chicken W chromosome.

Authors:  Aleksey S Komissarov; Svetlana A Galkina; Elena I Koshel; Maria M Kulak; Aleksander G Dyomin; Stephen J O'Brien; Elena R Gaginskaya; Alsu F Saifitdinova
Journal:  Chromosoma       Date:  2017-09-26       Impact factor: 4.316

6.  Centromere positions in chicken and Japanese quail chromosomes: de novo centromere formation versus pericentric inversions.

Authors:  Anna Zlotina; Svetlana Galkina; Alla Krasikova; Richard P M A Crooijmans; Martien A M Groenen; Elena Gaginskaya; Svetlana Deryusheva
Journal:  Chromosome Res       Date:  2012-12       Impact factor: 5.239

7.  Avian comparative genomics: reciprocal chromosome painting between domestic chicken (Gallus gallus) and the stone curlew (Burhinus oedicnemus, Charadriiformes)--an atypical species with low diploid number.

Authors:  Wenhui Nie; Patricia C M O'Brien; Bee L Ng; Beiyuan Fu; Vitaly Volobouev; Nigel P Carter; Malcolm A Ferguson-Smith; Fengtang Yang
Journal:  Chromosome Res       Date:  2009-01-27       Impact factor: 5.239

8.  A comprehensive expressed sequence tag linkage map for tiger salamander and Mexican axolotl: enabling gene mapping and comparative genomics in Ambystoma.

Authors:  J J Smith; D K Kump; J A Walker; D M Parichy; S R Voss
Journal:  Genetics       Date:  2005-08-03       Impact factor: 4.562

9.  Molecular cytogenetics of the california condor: evolutionary and conservation implications.

Authors:  W S Modi; M Romanov; E D Green; O Ryder
Journal:  Cytogenet Genome Res       Date:  2009-12-29       Impact factor: 1.636

10.  Characterization of chromosome structures of Falconinae (Falconidae, Falconiformes, Aves) by chromosome painting and delineation of chromosome rearrangements during their differentiation.

Authors:  Chizuko Nishida; Junko Ishijima; Ayumi Kosaka; Hideyuki Tanabe; Felix A Habermann; Darren K Griffin; Yoichi Matsuda
Journal:  Chromosome Res       Date:  2008       Impact factor: 5.239

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