Literature DB >> 15389321

Development of a gene-based radiation hybrid map of chicken Chromosome 7 and comparison to human and mouse.

Mireille Morisson1, Carine Jiguet-Jiglaire, Sophie Leroux, Thomas Faraut, Suzanne Bardes, Katia Feve, Carine Genet, Frédérique Pitel, Denis Milan, Alain Vignal.   

Abstract

To validate the ChickRH6 whole-genome radiation hybrid (WGRH) panel, we constructed a map of chicken Chromosome 7 based on 19 microsatellite markers from the genetic map and 76 ESTs (expressed sequence tags), whose efficient targeted development was made possible by using the ICCARE software. This high-density radiation hybrid (RH) map of a chicken macrochromosome gives us indications on characteristics of ChickRH6. The potential resolution of the panel is 325 kb and the practical resolution of our framework map is 1.3 Mb. Based on these results, a complete framework map of the chicken genome would comprise 1000 markers. The marker order is in good agreement with the genetic map and comparison with the human and mouse sequence maps revealed a number of internal rearrangements.

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Year:  2004        PMID： 15389321     DOI： 10.1007/s00335-004-3003-y

Source DB:  PubMed          Journal:  Mamm Genome        ISSN： 0938-8990            Impact factor:   2.957


  35 in total

1.  Radiation hybrid mapping of the zebrafish genome.

Authors:  N A Hukriede; L Joly; M Tsang; J Miles; P Tellis; J A Epstein; W B Barbazuk; F N Li; B Paw; J H Postlethwait; T J Hudson; L I Zon; J D McPherson; M Chevrette; I B Dawid; S L Johnson; M Ekker
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-17       Impact factor: 11.205

2.  Comparative chromosome painting of chicken autosomal paints 1-9 in nine different bird species.

Authors:  M Guttenbach; I Nanda; W Feichtinger; J S Masabanda; D K Griffin; M Schmid
Journal:  Cytogenet Genome Res       Date:  2003       Impact factor: 1.636

3.  Statistical methods for multipoint radiation hybrid mapping.

Authors:  M Boehnke; K Lange; D R Cox
Journal:  Am J Hum Genet       Date:  1991-12       Impact factor: 11.025

4.  CARTHAGENE: constructing and joining maximum likelihood genetic maps.

Authors:  T Schiex; C Gaspin
Journal:  Proc Int Conf Intell Syst Mol Biol       Date:  1997

5.  A large database of chicken bursal ESTs as a resource for the analysis of vertebrate gene function.

Authors:  I Abdrakhmanov; D Lodygin; P Geroth; H Arakawa; A Law; J Plachy; B Korn; J M Buerstedde
Journal:  Genome Res       Date:  2000-12       Impact factor: 9.043

6.  A radiation hybrid map of the zebrafish genome.

Authors:  R Geisler; G J Rauch; H Baier; F van Bebber; L Bross; M P Dekens; K Finger; C Fricke; M A Gates; H Geiger; S Geiger-Rudolph; D Gilmour; S Glaser; L Gnügge; H Habeck; K Hingst; S Holley; J Keenan; A Kirn; H Knaut; D Lashkari; F Maderspacher; U Martyn; S Neuhauss; C Neumann; T Nicolson; F Pelegri; R Ray; J M Rick; H Roehl; T Roeser; H E Schauerte; A F Schier; U Schönberger; H B Schönthaler; S Schulte-Merker; C Seydler; W S Talbot; C Weiler; C Nüsslein-Volhard; P Haffter
Journal:  Nat Genet       Date:  1999-09       Impact factor: 38.330

7.  An expressed sequence tag database of T-cell-enriched activated chicken splenocytes: sequence analysis of 5251 clones.

Authors:  V G Tirunagaru; L Sofer; J Cui; J Burnside
Journal:  Genomics       Date:  2000-06-01       Impact factor: 5.736

8.  A global control region defines a chromosomal regulatory landscape containing the HoxD cluster.

Authors:  François Spitz; Federico Gonzalez; Denis Duboule
Journal:  Cell       Date:  2003-05-02       Impact factor: 41.582

9.  An extended chicken karyotype, including the NOR chromosome.

Authors:  H Auer; B Mayr; M Lambrou; W Schleger
Journal:  Cytogenet Cell Genet       Date:  1987

10.  Characterization of whole genome radiation hybrid mapping resources for non-mammalian vertebrates.

Authors:  C Kwok; R M Korn; M E Davis; D W Burt; R Critcher; L McCarthy; B H Paw; L I Zon; P N Goodfellow; K Schmitt
Journal:  Nucleic Acids Res       Date:  1998-08-01       Impact factor: 16.971
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  6 in total

1.  Comparative genomics provides evidence for close evolutionary relationships between the urotensin II and somatostatin gene families.

Authors:  Hervé Tostivint; Lucille Joly; Isabelle Lihrmann; Caroline Parmentier; Alexis Lebon; Mireille Morisson; André Calas; Marc Ekker; Hubert Vaudry
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-07       Impact factor: 11.205

2.  Integrative mapping analysis of chicken microchromosome 16 organization.

Authors:  Romain Solinhac; Sophie Leroux; Svetlana Galkina; Olympe Chazara; Katia Feve; Florence Vignoles; Mireille Morisson; Svetlana Derjusheva; Bertrand Bed'hom; Alain Vignal; Valérie Fillon; Frédérique Pitel
Journal:  BMC Genomics       Date:  2010-11-04       Impact factor: 3.969

3.  Construction of a radiation hybrid map of chicken chromosome 2 and alignment to the chicken draft sequence.

Authors:  Sophie Leroux; Mélanie Dottax; Suzanne Bardes; Florence Vignoles; Katia Fève; Frédérique Pitel; Mireille Morisson; Alain Vignal
Journal:  BMC Genomics       Date:  2005-02-04       Impact factor: 3.969

4.  Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping.

Authors:  Marine Douaud; Katia Fève; Marie Gerus; Valérie Fillon; Suzanne Bardes; David Gourichon; Deborah A Dawson; Olivier Hanotte; Terry Burke; Florence Vignoles; Mireille Morisson; Michèle Tixier-Boichard; Alain Vignal; Frédérique Pitel
Journal:  BMC Genomics       Date:  2008-03-17       Impact factor: 3.969

5.  A high-resolution radiation hybrid map of chicken chromosome 5 and comparison with human chromosomes.

Authors:  Frédérique Pitel; Behnam Abasht; Mireille Morisson; Richard P M A Crooijmans; Florence Vignoles; Sophie Leroux; Katia Feve; Suzanne Bardes; Denis Milan; Sandrine Lagarrigue; Martien A M Groenen; Madeleine Douaire; Alain Vignal
Journal:  BMC Genomics       Date:  2004-09-15       Impact factor: 3.969

6.  Mapping and genotypic analysis of the NK-lysin gene in chicken.

Authors:  Mi Ok Lee; Ence Yang; Mireille Morisson; Alain Vignal; Yong-Zhen Huang; Hans H Cheng; William M Muir; Susan J Lamont; Hyun Soon Lillehoj; Sung Hyen Lee; James E Womack
Journal:  Genet Sel Evol       Date:  2014-07-07       Impact factor: 4.297
  6 in total

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