Literature DB >> 14752259

Triple quantum decoherence under multiple refocusing: slow correlated chemical shift modulations of C' and N nuclei in proteins.

Julien Wist1, Dominique Frueh, Joel R Tolman, Geoffrey Bodenhausen.   

Abstract

A new experiment allows the identification of residues that feature slow conformational exchange in macromolecules. Rotations about dihedral angles that are slower than the global correlation time tau(c) cause a modulation of the isotropic chemical shifts of the nuclei. If these fluctuations are correlated they induce a differential line broadening between three-spin single-quantum and triple-quantum coherences involving three nuclei such as the carbonyl C', the neighbouring amide nitrogen N and the amide proton H(N) belonging to a pair of consecutive amino acids. A cross-correlated relaxation rate R (CS/CS)(C'N) can be determined that corresponds to the sum of the isotropic and anisotropic contributions to the chemical shift modulations of the carbonyl carbon and nitrogen nuclei. Only the isotropic contributions depend on the pulse repetition rate of a multiple-refocusing sequence. An attenuation of the relaxation rate with increasing pulse repetition rate can therefore be attributed to slow motions. The asparagine N25 residue of ubiquitin, located in the first alpha-helix, is shown to feature significant slow conformational exchange.

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Year:  2004        PMID: 14752259     DOI: 10.1023/B:JNMR.0000013699.48099.38

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  15 in total

1.  Estimating the time scale of chemical exchange of proteins from measurements of transverse relaxation rates in solution.

Authors:  R Ishima; D A Torchia
Journal:  J Biomol NMR       Date:  1999-08       Impact factor: 2.835

2.  Simulations of NMR pulse sequences during equilibrium and non-equilibrium chemical exchange.

Authors:  M Helgstrand; T Härd; P Allard
Journal:  J Biomol NMR       Date:  2000-09       Impact factor: 2.835

3.  Orientation of amide-nitrogen-15 chemical shift tensors in peptides: a quantum chemical study.

Authors:  J R Brender; D M Taylor; A Ramamoorthy
Journal:  J Am Chem Soc       Date:  2001-02-07       Impact factor: 15.419

4.  Protein dynamics in supercooled water: the search for slow motional modes.

Authors:  Jeffrey L Mills; Thomas Szyperski
Journal:  J Biomol NMR       Date:  2002-05       Impact factor: 2.835

5.  Hydrogen bonds in RNA base pairs investigated by cross-correlated relaxation of multiple-quantum coherence in NMR.

Authors:  E Chiarparin; S Rüdisser; G Bodenhausen
Journal:  Chemphyschem       Date:  2001-01-19       Impact factor: 3.102

6.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

7.  NMR mapping of the recombinant mouse major urinary protein I binding site occupied by the pheromone 2-sec-butyl-4,5-dihydrothiazole.

Authors:  L Zídek; M J Stone; S M Lato; M D Pagel; Z Miao; A D Ellington; M V Novotny
Journal:  Biochemistry       Date:  1999-08-03       Impact factor: 3.162

8.  The use of TROSY for detection and suppression of conformational exchange NMR line broadening in biological macromolecules.

Authors:  K Pervushin
Journal:  J Biomol NMR       Date:  2001-07       Impact factor: 2.835

9.  Differential multiple-quantum relaxation arising from cross-correlated time-modulation of isotropic chemical shifts.

Authors:  K Kloiber; R Konrat
Journal:  J Biomol NMR       Date:  2000-09       Impact factor: 2.835

10.  A general method for assigning NMR spectra of denatured proteins using 3D HC(CO)NH-TOCSY triple resonance experiments.

Authors:  T M Logan; E T Olejniczak; R X Xu; S W Fesik
Journal:  J Biomol NMR       Date:  1993-03       Impact factor: 2.835

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  11 in total

Review 1.  Using protein motion to read, write, and erase ubiquitin signals.

Authors:  Aaron H Phillips; Jacob E Corn
Journal:  J Biol Chem       Date:  2015-09-09       Impact factor: 5.157

2.  Effects of protein-pheromone complexation on correlated chemical shift modulations.

Authors:  Chiara Perazzolo; Julien Wist; Karine Loth; Luisa Poggi; Steve Homans; Geoffrey Bodenhausen
Journal:  J Biomol NMR       Date:  2005-12       Impact factor: 2.835

3.  A thorough dynamic interpretation of residual dipolar couplings in ubiquitin.

Authors:  Nils A Lakomek; Teresa Carlomagno; Stefan Becker; Christian Griesinger; Jens Meiler
Journal:  J Biomol NMR       Date:  2006-02       Impact factor: 2.835

4.  Pressure effects on the ensemble dynamics of ubiquitin inspected with molecular dynamics simulations and isotropic reorientational eigenmode dynamics.

Authors:  Nikolaos G Sgourakis; Ryan Day; Scott A McCallum; Angel E Garcia
Journal:  Biophys J       Date:  2008-07-11       Impact factor: 4.033

5.  Microsecond timescale backbone conformational dynamics in ubiquitin studied with NMR R1rho relaxation experiments.

Authors:  Francesca Massi; Michael J Grey; Arthur G Palmer
Journal:  Protein Sci       Date:  2005-03       Impact factor: 6.725

6.  Correlated motions of C'-N and Cα-Cβ pairs in protonated and per-deuterated GB3.

Authors:  Liliya Vugmeyster; Aaron Griffin; Dmitry Ostrovsky; Shibani Bhattacharya; Parker J Nichols; C James McKnight; Beat Vögeli
Journal:  J Biomol NMR       Date:  2018-08-18       Impact factor: 2.835

7.  Conformational dynamics and structural plasticity play critical roles in the ubiquitin recognition of a UIM domain.

Authors:  Nikolaos G Sgourakis; Mayank M Patel; Angel E Garcia; George I Makhatadze; Scott A McCallum
Journal:  J Mol Biol       Date:  2010-01-04       Impact factor: 5.469

8.  Phosphorylation-induced changes in backbone dynamics of the dematin headpiece C-terminal domain.

Authors:  Liliya Vugmeyster; C James McKnight
Journal:  J Biomol NMR       Date:  2008-11-22       Impact factor: 2.835

9.  Evidence of chemical exchange in recombinant Major Urinary Protein and quenching thereof upon pheromone binding.

Authors:  Chiara Perazzolo; Mariachiara Verde; Steve W Homans; Geoffrey Bodenhausen
Journal:  J Biomol NMR       Date:  2007-03-07       Impact factor: 2.582

10.  Site-resolved measurement of microsecond-to-millisecond conformational-exchange processes in proteins by solid-state NMR spectroscopy.

Authors:  Martin Tollinger; Astrid C Sivertsen; Beat H Meier; Matthias Ernst; Paul Schanda
Journal:  J Am Chem Soc       Date:  2012-08-28       Impact factor: 15.419

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