Literature DB >> 10526408

Estimating the time scale of chemical exchange of proteins from measurements of transverse relaxation rates in solution.

R Ishima1, D A Torchia.   

Abstract

Chemical (conformational) exchange on the ms--microsecond time scale is reliably identified by the observation of transverse relaxation rates, Rex, that depend upon the strength of the effective field (omega 1eff = gamma B1eff) used in spin lock or CPMG experiments. In order to determine if the exchange correlation time, tau ex, is the fast or slow limit, measurements of (i) signal line shape and (ii) temperature dependence of Rex have been commonly used in studies of stable, small molecules. However, these approaches are often not applicable to proteins, because sample stability and solubility, respectively, limit the temperature range and signal sensitivity of experiments. Herein we use a complex, but general, two-site exchange equation to show when the simple fast exchange equations for Rex are good approximations, in the case of proteins. We then present a simple empirical equation that approximately predicts Rex in all exchange regimes, and explains these results in a clear, straightforward manner. Finally we show how one can reliably determine whether tau ex is in the fast or slow exchange limit.

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Year:  1999        PMID: 10526408     DOI: 10.1023/a:1008324025406

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  4 in total

1.  Microsecond time scale dynamics in the RXR DNA-binding domain from a combination of spin-echo and off-resonance rotating frame relaxation measurements.

Authors:  F A Mulder; P J van Tilborg; R Kaptein; R Boelens
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

2.  SPIN-ECHO STUDIES OF CHEMICAL EXCHANGE. II. CLOSED FORMULAS FOR TWO SITES.

Authors:  A ALLERHAND; H S GUTOWSKY
Journal:  J Chem Phys       Date:  1965-03-01       Impact factor: 3.488

3.  Protein dynamics studied by rotating frame 15N spin relaxation times.

Authors:  T Szyperski; P Luginbühl; G Otting; P Güntert; K Wüthrich
Journal:  J Biomol NMR       Date:  1993-03       Impact factor: 2.835

4.  Direct measurements of the dissociation-rate constant for inhibitor-enzyme complexes via the T1 rho and T2 (CPMG) methods.

Authors:  D G Davis; M E Perlman; R E London
Journal:  J Magn Reson B       Date:  1994-07
  4 in total
  43 in total

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Journal:  Magn Reson Med       Date:  2011-12-08       Impact factor: 4.668

2.  GUARDD: user-friendly MATLAB software for rigorous analysis of CPMG RD NMR data.

Authors:  Ian R Kleckner; Mark P Foster
Journal:  J Biomol NMR       Date:  2011-12-11       Impact factor: 2.835

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Authors:  Julien Wist; Dominique Frueh; Joel R Tolman; Geoffrey Bodenhausen
Journal:  J Biomol NMR       Date:  2004-03       Impact factor: 2.835

4.  Differential multiple quantum relaxation caused by chemical exchange outside the fast exchange limit.

Authors:  Chunyu Wang; Arthur G Palmer
Journal:  J Biomol NMR       Date:  2002-11       Impact factor: 2.835

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Journal:  Protein Sci       Date:  2003-01       Impact factor: 6.725

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Authors:  Guruvasuthevan R Thuduppathy; R Blake Hill
Journal:  Methods Enzymol       Date:  2004       Impact factor: 1.600

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Authors:  Markus Zeeb; Maik H Jacob; Thomas Schindler; Jochen Balbach
Journal:  J Biomol NMR       Date:  2003-11       Impact factor: 2.835

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Authors:  George P Lisi; J Patrick Loria
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2015-12-07       Impact factor: 9.795

10.  (13)C-NMR studies on disulfide bond isomerization in bovine pancreatic trypsin inhibitor (BPTI).

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Journal:  J Biomol NMR       Date:  2016-08-26       Impact factor: 2.835

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