Literature DB >> 30121872

Correlated motions of C'-N and Cα-Cβ pairs in protonated and per-deuterated GB3.

Liliya Vugmeyster1, Aaron Griffin2, Dmitry Ostrovsky3, Shibani Bhattacharya4, Parker J Nichols5, C James McKnight6, Beat Vögeli5.   

Abstract

We investigated correlated µs-ms time scale motions of neighboring 13C'-15N and 13Cα-13Cβ nuclei in both protonated and perdeuterated samples of GB3. The techniques employed, NMR relaxation due to cross-correlated chemical shift modulations, specifically target concerted changes in the isotropic chemical shifts of the two nuclei associated with spatial fluctuations. Field-dependence of the relaxation rates permits identification of the parameters defining the chemical exchange rate constant under the assumption of a two-site exchange. The time scale of motions falls into the intermediate to fast regime (with respect to the chemical shift time scale, 100-400 s-1 range) for the 13C'-15N pairs and into the slow to intermediate regime for the 13Cα-13Cβ pairs (about 150 s-1). Comparison of the results obtained for protonated and deuterated GB3 suggests that deuteration has a tendency to reduce these slow scale correlated motions, especially for the 13Cα-13Cβ pairs.

Entities:  

Keywords:  Correlated motions; Cross-correlation NMR relaxation; Deuteration; GB3; Protein dynamics

Mesh:

Substances:

Year:  2018        PMID: 30121872      PMCID: PMC6218248          DOI: 10.1007/s10858-018-0205-2

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  45 in total

1.  Effect of heavy water on protein flexibility.

Authors:  Patrizia Cioni; Giovanni B Strambini
Journal:  Biophys J       Date:  2002-06       Impact factor: 4.033

2.  Temperature dependence of anisotropic protein backbone dynamics.

Authors:  Tianzhi Wang; Sheng Cai; Erik R P Zuiderweg
Journal:  J Am Chem Soc       Date:  2003-07-16       Impact factor: 15.419

3.  Effective rotational correlation times of proteins from NMR relaxation interference.

Authors:  Donghan Lee; Christian Hilty; Gerhard Wider; Kurt Wüthrich
Journal:  J Magn Reson       Date:  2005-09-26       Impact factor: 2.229

4.  Correlated dynamics of consecutive residues reveal transient and cooperative unfolding of secondary structure in proteins.

Authors:  Patrik Lundström; Frans A A Mulder; Mikael Akke
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-08       Impact factor: 11.205

5.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

6.  Characterizing the use of perdeuteration in NMR studies of large proteins: 13C, 15N and 1H assignments of human carbonic anhydrase II.

Authors:  R A Venters; B T Farmer; C A Fierke; L D Spicer
Journal:  J Mol Biol       Date:  1996-12-20       Impact factor: 5.469

7.  Quantitative analysis of conformational exchange contributions to 1H-15N multiple-quantum relaxation using field-dependent measurements. Time scale and structural characterization of exchange in a calmodulin C-terminal domain mutant.

Authors:  Patrik Lundström; Mikael Akke
Journal:  J Am Chem Soc       Date:  2004-01-28       Impact factor: 15.419

8.  Probing slow backbone dynamics in proteins using TROSY-based experiments to detect cross-correlated time-modulation of isotropic chemical shifts.

Authors:  Ananya Majumdar; Ranajeet Ghose
Journal:  J Biomol NMR       Date:  2004-03       Impact factor: 2.835

9.  Phosphorylation-induced changes in backbone dynamics of the dematin headpiece C-terminal domain.

Authors:  Liliya Vugmeyster; C James McKnight
Journal:  J Biomol NMR       Date:  2008-11-22       Impact factor: 2.835

10.  Impact of Deuteration on the Assembly Kinetics of Transthyretin Monitored by Native Mass Spectrometry and Implications for Amyloidoses.

Authors:  Ai Woon Yee; Martine Moulin; Nina Breteau; Michael Haertlein; Edward P Mitchell; Jonathan B Cooper; Elisabetta Boeri Erba; V Trevor Forsyth
Journal:  Angew Chem Int Ed Engl       Date:  2016-06-17       Impact factor: 15.336

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  2 in total

1.  Deuteration of nonexchangeable protons on proteins affects their thermal stability, side-chain dynamics, and hydrophobicity.

Authors:  Parker J Nichols; Isaac Falconer; Aaron Griffin; Colin Mant; Robert Hodges; Christopher J McKnight; Beat Vögeli; Liliya Vugmeyster
Journal:  Protein Sci       Date:  2020-05-26       Impact factor: 6.725

Review 2.  Distance-independent Cross-correlated Relaxation and Isotropic Chemical Shift Modulation in Protein Dynamics Studies.

Authors:  Beat Vögeli; Liliya Vugmeyster
Journal:  Chemphyschem       Date:  2018-09-03       Impact factor: 3.520

  2 in total

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