Literature DB >> 14747703

The impact of Lys-->Arg surface mutations on the crystallization of the globular domain of RhoGDI.

Jan Czepas1, Yancho Devedjiev, Daniel Krowarsch, Urszula Derewenda, Jacek Otlewski, Zygmunt S Derewenda.   

Abstract

The potential of rational surface mutagenesis for enhanced protein crystallization is being probed in an ongoing effort. In previous work, it was hypothesized that residues with high conformational entropy such as Glu and Lys are suitable targets for surface mutagenesis, as they are rarely incorporated in crystal contacts or protein-protein interfaces. Previous experiments using Lys-->Ala, Glu-->Ala and Glu-->Asp mutants confirmed that mutated proteins were more likely to crystallize. In the present paper, the usefulness of Lys-->Arg mutations is studied. Several mutations of the globular domain of human RhoGDI were generated, including the single mutants K105R, K113R, K127R, K138R and K141R, the double mutants K(98,99)R and K(199,200)R and the triple mutants K(98,99,105)R and K(135,138,141)R. It is shown that Lys-->Arg mutants are more likely to crystallize than the wild-type protein, although not as likely as Lys-->Ala mutants. Out of the nine mutants tested, five produced diffracting crystals, including the K(199,200)R double mutant, which crystallized in a new space group and exceeded by approximately 1.0 A the resolution of the diffraction of the wild-type crystal. Major crystal contacts in the new lattice were created by the mutated epitope.

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Year:  2004        PMID: 14747703     DOI: 10.1107/S0907444903026271

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  20 in total

1.  Expression, purification, crystallization and preliminary X-ray analysis of the EIICGlc domain of the Escherichia coli glucose transporter.

Authors:  Andreas Zurbriggen; Philipp Schneider; Priska Bähler; Ulrich Baumann; Bernhard Erni
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-05-26

2.  New surface contacts formed upon reductive lysine methylation: improving the probability of protein crystallization.

Authors:  Pawel Sledz; Heping Zheng; Krzysztof Murzyn; Maksymilian Chruszcz; Matthew D Zimmerman; Mahendra D Chordia; Andrzej Joachimiak; Wladek Minor
Journal:  Protein Sci       Date:  2010-07       Impact factor: 6.725

3.  Protein production and crystallization at SECSG -- an overview.

Authors:  Bi-Cheng Wang; Michael W W Adams; Harry Dailey; Larry DeLucas; Ming Luo; John Rose; Robert Bunzel; Tamara Dailey; Jeff Habel; Peter Horanyi; Francis E Jenney; Irina Kataeva; Han-Seung Lee; Songlin Li; Ting Li; Dawei Lin; Zhi-Jie Liu; Chi-Hao Luan; Michael Mayer; Lisa Nagy; M Gary Newton; Joseph Ng; Farris L Poole; Ashit Shah; Claudia Shah; Frank J Sugar; Hao Xu
Journal:  J Struct Funct Genomics       Date:  2005

4.  Combining site-specific mutagenesis and seeding as a strategy to crystallize 'difficult' proteins: the case of Staphylococcus aureus thioredoxin.

Authors:  Goedele Roos; Elke Brosens; Khadija Wahni; Aline Desmyter; Silvia Spinelli; Lode Wyns; Joris Messens; Remy Loris
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-11-30

5.  Identifying protein construct variants with increased crystallization propensity--a case study.

Authors:  Guido A Malawski; Roman C Hillig; Felipe Monteclaro; Uwe Eberspaecher; Arndt A P Schmitz; Kerstin Crusius; Martina Huber; Ursula Egner; Peter Donner; Beate Müller-Tiemann
Journal:  Protein Sci       Date:  2006-12       Impact factor: 6.725

6.  An unexpected outcome of surface engineering an integral membrane protein: improved crystallization of cytochrome ba(3) from Thermus thermophilus.

Authors:  Bin Liu; V Mitch Luna; Ying Chen; C David Stout; James A Fee
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-11-21

7.  Crystallization of a pentapeptide-repeat protein by reductive cyclic pentylation of free amines with glutaraldehyde.

Authors:  Matthew W Vetting; Subray S Hegde; John S Blanchard
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-04-18

8.  High-throughput crystallization-to-structure pipeline at RIKEN SPring-8 Center.

Authors:  Michihiro Sugahara; Yukuhiko Asada; Katsumi Shimizu; Hitoshi Yamamoto; Neratur K Lokanath; Hisashi Mizutani; Bagautdin Bagautdinov; Yoshinori Matsuura; Midori Taketa; Yuichi Kageyama; Naoko Ono; Yuko Morikawa; Yukiko Tanaka; Hiroki Shimada; Takanobu Nakamoto; Mitsuaki Sugahara; Masaki Yamamoto; Naoki Kunishima
Journal:  J Struct Funct Genomics       Date:  2008-08-02

9.  The role of flexibility and molecular shape in the crystallization of proteins by surface mutagenesis.

Authors:  Yancho D Devedjiev
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-01-28       Impact factor: 1.056

Review 10.  Diffraction Techniques in Structural Biology.

Authors:  Martin Egli
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2016-06-01
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