Literature DB >> 12878841

Optimized set of two-dimensional experiments for fast sequential assignment, secondary structure determination, and backbone fold validation of 13C/15N-labelled proteins.

Beate Bersch1, Emmanuel Rossy, Jacques Covès, Bernhard Brutscher.   

Abstract

NMR experiments are presented which allow backbone resonance assignment, secondary structure identification, and in favorable cases also molecular fold topology determination from a series of two-dimensional 1H-15N HSQC-like spectra. The 1H-15N correlation peaks are frequency shifted by an amount +/- omegaX along the 15N dimension, where omegaX is the Calpha, Cbeta, or Halpha frequency of the same or the preceding residue. Because of the low dimensionality (2D) of the experiments, high-resolution spectra are obtained in a short overall experimental time. The whole series of seven experiments can be performed in typically less than one day. This approach significantly reduces experimental time when compared to the standard 3D-based methods. The here presented methodology is thus especially appealing in the context of high-throughput NMR studies of protein structure, dynamics or molecular interfaces.

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Year:  2003        PMID: 12878841     DOI: 10.1023/a:1024746306675

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  14 in total

Review 1.  Protein NMR spectroscopy in structural genomics.

Authors:  G T Montelione; D Zheng; Y J Huang; K C Gunsalus; T Szyperski
Journal:  Nat Struct Biol       Date:  2000-11

2.  Metallochaperones and metal-transporting ATPases: a comparative analysis of sequences and structures.

Authors:  Fabio Arnesano; Lucia Banci; Ivano Bertini; Simone Ciofi-Baffoni; Elena Molteni; David L Huffman; Thomas V O'Halloran
Journal:  Genome Res       Date:  2002-02       Impact factor: 9.043

3.  Novel 2D triple-resonance NMR experiments for sequential resonance assignments of proteins.

Authors:  Keyang Ding; Angela M Gronenborn
Journal:  J Magn Reson       Date:  2002-06       Impact factor: 2.229

4.  Intraresidue HNCA and COHNCA experiments for protein backbone resonance assignment.

Authors:  Bernhard Brutscher
Journal:  J Magn Reson       Date:  2002-05       Impact factor: 2.229

5.  GFT NMR, a new approach to rapidly obtain precise high-dimensional NMR spectral information.

Authors:  Seho Kim; Thomas Szyperski
Journal:  J Am Chem Soc       Date:  2003-02-05       Impact factor: 15.419

6.  A novel approach for the sequential backbone assignment of larger proteins: selective intra-HNCA and DQ-HNCA.

Authors:  Daniel Nietlispach; Yutaka Ito; Ernest D Laue
Journal:  J Am Chem Soc       Date:  2002-09-18       Impact factor: 15.419

Review 7.  Measurement of J and dipolar couplings from simplified two-dimensional NMR spectra.

Authors:  M Ottiger; F Delaglio; A Bax
Journal:  J Magn Reson       Date:  1998-04       Impact factor: 2.229

8.  Solution structure of the yeast copper transporter domain Ccc2a in the apo and Cu(I)-loaded states.

Authors:  L Banci; I Bertini; S Ciofi-Baffoni; D L Huffman; T V O'Halloran
Journal:  J Biol Chem       Date:  2000-11-16       Impact factor: 5.157

9.  Intraresidual HNCA: an experiment for correlating only intraresidual backbone resonances.

Authors:  Perttu Permi
Journal:  J Biomol NMR       Date:  2002-07       Impact factor: 2.835

10.  Assignment of NMR spectra of proteins using triple-resonance two-dimensional experiments.

Authors:  J P Simorre; B Brutscher; M S Caffrey; D Marion
Journal:  J Biomol NMR       Date:  1994-05       Impact factor: 2.835

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  9 in total

Review 1.  Radial sampling for fast NMR: Concepts and practices over three decades.

Authors:  Brian E Coggins; Ronald A Venters; Pei Zhou
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-07-30       Impact factor: 9.795

2.  GFT NMR experiments for polypeptide backbone and 13Cbeta chemical shift assignment.

Authors:  Seho Kim; Thomas Szyperski
Journal:  J Biomol NMR       Date:  2004-02       Impact factor: 2.835

3.  (3,2)D GFT-NMR experiments for fast data collection from proteins.

Authors:  Youlin Xia; Guang Zhu; Sudha Veeraraghavan; Xiaolian Gao
Journal:  J Biomol NMR       Date:  2004-08       Impact factor: 2.835

4.  Combined frequency- and time-domain NMR spectroscopy. Application to fast protein resonance assignment.

Authors:  Bernhard Brutscher
Journal:  J Biomol NMR       Date:  2004-05       Impact factor: 2.835

5.  Unambiguous assignment of NMR protein backbone signals with a time-shared triple-resonance experiment.

Authors:  Dominique P Frueh; Haribabu Arthanari; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2005-11       Impact factor: 2.835

6.  Processing of ND NMR spectra sampled in polar coordinates: a simple Fourier transform instead of a reconstruction.

Authors:  Dominique Marion
Journal:  J Biomol NMR       Date:  2006-09-09       Impact factor: 2.835

7.  High-resolution aliphatic side-chain assignments in 3D HCcoNH experiments with joint H-C evolution and non-uniform sampling.

Authors:  Zhen-Yu J Sun; Sven G Hyberts; David Rovnyak; Sunghyouk Park; Alan S Stern; Jeffrey C Hoch; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2005-05       Impact factor: 2.835

8.  An intraresidual i(HCA)CO(CA)NH experiment for the assignment of main-chain resonances in 15N, 13C labeled proteins.

Authors:  Sampo Mäntylahti; Helena Tossavainen; Maarit Hellman; Perttu Permi
Journal:  J Biomol NMR       Date:  2009-11       Impact factor: 2.835

9.  Biophysical characterization of the MerP-like amino-terminal extension of the mercuric reductase from Ralstonia metallidurans CH34.

Authors:  Emmanuel Rossy; Ludovic Champier; Beate Bersch; Bernhard Brutscher; Martin Blackledge; Jacques Covès
Journal:  J Biol Inorg Chem       Date:  2003-11-18       Impact factor: 3.358

  9 in total

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