Literature DB >> 12238592

Intraresidual HNCA: an experiment for correlating only intraresidual backbone resonances.

Perttu Permi1.   

Abstract

Resonance overlap in 13Calpha-dimension can seriously deteriorate sequential assignment of proteins, especially in the case of highly alpha helical or partially unfolded structures. In this paper, two novel triple-resonance experiments, for obtaining solely intraresidual HN, N, Calpha correlations, are introduced. The proposed experiments are complementary to the conventional HN(CO)CA experiment, and can be utilized for the sequential assignment of 15N/13C/(2H)-labeled proteins. Coherence transfer efficiency of the new experiment is comparable to the conventional HNCA experiment on proteins with sufficiently long 15N transverse relaxation time. These new coherence transfer schemes are also very useful building blocks for experiments gathering structural information, such as J-couplings, exclusively on the intraresidual alpha carbon. Experimental assessment is demonstrated on ubiquitin at 600 1H MHz.

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Year:  2002        PMID: 12238592     DOI: 10.1023/a:1019819514298

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  13 in total

1.  Transverse-relaxation-optimized (TROSY) gradient-enhanced triple-resonance NMR spectroscopy.

Authors:  J P Loria; M Rance; A G Palmer
Journal:  J Magn Reson       Date:  1999-11       Impact factor: 2.229

2.  A new approach for obtaining sequential assignment of large proteins.

Authors:  P Permi; A Annila
Journal:  J Biomol NMR       Date:  2001-06       Impact factor: 2.835

3.  Evaluation and optimization of coherence transfer in high molecular weight systems.

Authors:  Perttu Permi; Arto Annila
Journal:  J Magn Reson       Date:  2002-03       Impact factor: 2.229

4.  An efficient 3D NMR technique for correlating the proton and 15N backbone amide resonances with the alpha-carbon of the preceding residue in uniformly 15N/13C enriched proteins.

Authors:  A Bax; M Ikura
Journal:  J Biomol NMR       Date:  1991-05       Impact factor: 2.835

5.  Single Transition-to-single Transition Polarization Transfer (ST2-PT) in [15N,1H]-TROSY.

Authors:  K V Pervushin; G Wider; K Wüthrich
Journal:  J Biomol NMR       Date:  1998-08       Impact factor: 2.835

6.  Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution.

Authors:  K Pervushin; R Riek; G Wider; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

7.  Measurement of 15N-13C J couplings in staphylococcal nuclease.

Authors:  F Delaglio; D A Torchia; A Bax
Journal:  J Biomol NMR       Date:  1991-11       Impact factor: 2.835

8.  Sensitivity improvement of transverse relaxation-optimized spectroscopy.

Authors:  M Rance; J P Loria
Journal:  J Magn Reson       Date:  1999-01       Impact factor: 2.229

9.  Amino acid type determination in the sequential assignment procedure of uniformly 13C/15N-enriched proteins.

Authors:  S Grzesiek; A Bax
Journal:  J Biomol NMR       Date:  1993-03       Impact factor: 2.835

10.  A general method for assigning NMR spectra of denatured proteins using 3D HC(CO)NH-TOCSY triple resonance experiments.

Authors:  T M Logan; E T Olejniczak; R X Xu; S W Fesik
Journal:  J Biomol NMR       Date:  1993-03       Impact factor: 2.835

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  19 in total

1.  A selective intra-HN(CA)CO experiment for the backbone assignment of deuterated proteins.

Authors:  Daniel Nietlispach
Journal:  J Biomol NMR       Date:  2004-02       Impact factor: 2.835

2.  HA-detected experiments for the backbone assignment of intrinsically disordered proteins.

Authors:  Sampo Mäntylahti; Olli Aitio; Maarit Hellman; Perttu Permi
Journal:  J Biomol NMR       Date:  2010-05-01       Impact factor: 2.835

3.  (1)H, (13)C and (15)N resonance assignments of coactosin, a cytoskeletal regulatory protein.

Authors:  Maarit Hellman; Ville Paavilainen; Arto Annila; Pekka Lappalainen; Perttu Permi
Journal:  J Biomol NMR       Date:  2004-11       Impact factor: 2.835

4.  Efficient assignment of methyl resonances: enhanced sensitivity by gradient selection in a DE-MQ-(H)CC(m)Ht (m)-TOCSY experiment.

Authors:  Perttu Permi; Helena Tossavainen; Maarit Hellman
Journal:  J Biomol NMR       Date:  2004-11       Impact factor: 2.835

5.  4D non-uniformly sampled HCBCACON and ¹J(NCα)-selective HCBCANCO experiments for the sequential assignment and chemical shift analysis of intrinsically disordered proteins.

Authors:  Jiří Nováček; Noam Y Haba; Jordan H Chill; Lukáš Zídek; Vladimír Sklenář
Journal:  J Biomol NMR       Date:  2012-05-13       Impact factor: 2.835

6.  Bridge over troubled proline: assignment of intrinsically disordered proteins using (HCA)CON(CAN)H and (HCA)N(CA)CO(N)H experiments concomitantly with HNCO and i(HCA)CO(CA)NH.

Authors:  Maarit Hellman; Henni Piirainen; Veli-Pekka Jaakola; Perttu Permi
Journal:  J Biomol NMR       Date:  2013-12-18       Impact factor: 2.835

7.  High-Resolution Diffusion Measurements of Proteins by NMR under Near-Physiological Conditions.

Authors:  Jongchan Lee; Sho Hee Park; Silvia Cavagnero; Jung Ho Lee
Journal:  Anal Chem       Date:  2020-03-20       Impact factor: 6.986

8.  Improved accuracy in measuring one-bond and two-bond (15)N, (13)C (α) coupling constants in proteins by double-inphase/antiphase (DIPAP) spectroscopy.

Authors:  Frank Löhr; Sina Reckel; Susanne Stefer; Volker Dötsch; Jürgen M Schmidt
Journal:  J Biomol NMR       Date:  2011-06-07       Impact factor: 2.835

9.  Extension of the HA-detection based approach: (HCA)CON(CA)H and (HCA)NCO(CA)H experiments for the main-chain assignment of intrinsically disordered proteins.

Authors:  Sampo Mäntylahti; Maarit Hellman; Perttu Permi
Journal:  J Biomol NMR       Date:  2011-01-25       Impact factor: 2.835

10.  Measurement of residual dipolar couplings from 1Halpha to 13Calpha and 15N using a simple HNCA-based experiment.

Authors:  Perttu Permi
Journal:  J Biomol NMR       Date:  2003-12       Impact factor: 2.835

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