Literature DB >> 16964531

Processing of ND NMR spectra sampled in polar coordinates: a simple Fourier transform instead of a reconstruction.

Dominique Marion1.   

Abstract

In order to reduce the acquisition time of multidimensional NMR spectra of biological macromolecules, projected spectra (or in other words, spectra sampled in polar coordinates) can be used. Their standard processing involves a regular FFT of the projections followed by a reconstruction, i.e. a non-linear process. In this communication, we show that a 2D discrete Fourier transform can be implemented in polar coordinates to obtain directly a frequency domain spectrum. Aliasing due to local violations of the Nyquist sampling theorem gives rise to base line ridges but the peak line-shapes are not distorted as in most reconstruction methods. The sampling scheme is not linear and the data points in the time domain should thus be weighted accordingly in the polar FT; however, artifacts can be reduced by additional data weighting of the undersampled regions. This processing does not require any parameter tuning and is straightforward to use. The algorithm written for polar sampling can be adapted to any sampling scheme and will permit to investigate better compromises in terms of experimental time and lack of artifacts.

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Year:  2006        PMID: 16964531     DOI: 10.1007/s10858-006-9066-1

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  17 in total

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Authors:  J G Pipe
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3.  Accelerated acquisition of high resolution triple-resonance spectra using non-uniform sampling and maximum entropy reconstruction.

Authors:  David Rovnyak; Dominique P Frueh; Mallika Sastry; Zhen-Yu J Sun; Alan S Stern; Jeffrey C Hoch; Gerhard Wagner
Journal:  J Magn Reson       Date:  2004-09       Impact factor: 2.229

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Authors:  Ronald A Venters; Brian E Coggins; Doug Kojetin; John Cavanagh; Pei Zhou
Journal:  J Am Chem Soc       Date:  2005-06-22       Impact factor: 15.419

5.  Filtered backprojection for the reconstruction of a high-resolution (4,2)D CH3-NH NOESY spectrum on a 29 kDa protein.

Authors:  Brian E Coggins; Ronald A Venters; Pei Zhou
Journal:  J Am Chem Soc       Date:  2005-08-24       Impact factor: 15.419

6.  Fast acquisition of NMR spectra using Fourier transform of non-equispaced data.

Authors:  Dominique Marion
Journal:  J Biomol NMR       Date:  2005-06       Impact factor: 2.835

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8.  Sampling on concentric circles.

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Authors:  J P Simorre; B Brutscher; M S Caffrey; D Marion
Journal:  J Biomol NMR       Date:  1994-05       Impact factor: 2.835

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  24 in total

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Journal:  J Magn Reson       Date:  2011-01-04       Impact factor: 2.229

3.  HA-detected experiments for the backbone assignment of intrinsically disordered proteins.

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Journal:  J Biomol NMR       Date:  2010-05-01       Impact factor: 2.835

4.  Iterative algorithm of discrete Fourier transform for processing randomly sampled NMR data sets.

Authors:  Jan Stanek; Wiktor Koźmiński
Journal:  J Biomol NMR       Date:  2010-04-07       Impact factor: 2.835

5.  Sampling of the NMR time domain along concentric rings.

Authors:  Brian E Coggins; Pei Zhou
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6.  Phasing arbitrarily sampled multidimensional NMR data.

Authors:  John M Gledhill; A Joshua Wand
Journal:  J Magn Reson       Date:  2007-06-06       Impact factor: 2.229

7.  Covariance NMR in higher dimensions: application to 4D NOESY spectroscopy of proteins.

Authors:  David A Snyder; Fengli Zhang; Rafael Brüschweiler
Journal:  J Biomol NMR       Date:  2007-09-18       Impact factor: 2.835

8.  Analytical solution to the coupled evolution of multidimensional NMR data.

Authors:  Geoffrey A Mueller
Journal:  J Biomol NMR       Date:  2009-03-24       Impact factor: 2.835

9.  SEnD NMR: sensitivity enhanced n-dimensional NMR.

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10.  High resolution 4-D spectroscopy with sparse concentric shell sampling and FFT-CLEAN.

Authors:  Brian E Coggins; Pei Zhou
Journal:  J Biomol NMR       Date:  2008-10-14       Impact factor: 2.835

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