Literature DB >> 12731857

Picosecond dynamics of G-protein coupled receptor activation in rhodopsin from time-resolved UV resonance Raman spectroscopy.

Judy E Kim1, Duohai Pan, Richard A Mathies.   

Abstract

The protein response to retinal chromophore isomerization in the visual pigment rhodopsin is studied using picosecond time-resolved UV resonance Raman spectroscopy. High signal-to-noise Raman spectra are obtained using a 1 kHz Ti:Sapphire laser apparatus that provides <3 ps visible (466 nm) pump and UV (233 nm) probe pulses. When there is no time delay between the pump and probe events, tryptophan modes W18, W16, and W3 exhibit decreased Raman scattering intensity. At longer pump-probe time delays of +5 and +20 ps, both tryptophan (W18, W16, W3, and W1) and tyrosine (Y1 + 2xY16a, Y7a, Y8a) peak intensities drop by up to 3%. These intensity changes are attributed to decreased hydrophobicity in the microenvironment near at least one tryptophan and one tyrosine residue that likely arise from weakened interaction with the beta-ionone ring of the chromophore following cis-to-trans isomerization. Examination of the crystal structure suggests that W265 and Y268 are responsible for these signals. These UV Raman spectral changes are nearly identical to those observed for the rhodopsin-to-Meta I transition, implying that impulsively driven protein motion by the isomerizing chromophore during the 200 fs primary transition drives key structural changes that lead to protein activation.

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Year:  2003        PMID: 12731857      PMCID: PMC1404556          DOI: 10.1021/bi030026d

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  37 in total

1.  Difference in molecular structure of rod and cone visual pigments studied by Fourier transform infrared spectroscopy.

Authors:  H Imai; T Hirano; H Kandori; A Terakita; Y Shichida
Journal:  Biochemistry       Date:  2001-03-06       Impact factor: 3.162

2.  Femtosecond infrared spectroscopy of bacteriorhodopsin chromophore isomerization.

Authors:  Johannes Herbst; Karsten Heyne; Rolf Diller
Journal:  Science       Date:  2002-08-02       Impact factor: 47.728

Review 3.  Visual excitation and recovery.

Authors:  L Stryer
Journal:  J Biol Chem       Date:  1991-06-15       Impact factor: 5.157

4.  Ultraviolet resonance Raman examination of the light-induced protein structural changes in rhodopsin activation.

Authors:  G G Kochendoerfer; S Kaminaka; R A Mathies
Journal:  Biochemistry       Date:  1997-10-28       Impact factor: 3.162

5.  Complete assignment of the hydrogen out-of-plane wagging vibrations of bathorhodopsin: chromophore structure and energy storage in the primary photoproduct of vision.

Authors:  I Palings; E M van den Berg; J Lugtenburg; R A Mathies
Journal:  Biochemistry       Date:  1989-02-21       Impact factor: 3.162

6.  Photoexcitation of rhodopsin: conformation changes in the chromophore, protein and associated lipids as determined by FTIR difference spectroscopy.

Authors:  W J DeGrip; D Gray; J Gillespie; P H Bovee; E M Van den Berg; J Lugtenburg; K J Rothschild
Journal:  Photochem Photobiol       Date:  1988-10       Impact factor: 3.421

7.  Hemoglobin allostery: resonance Raman spectroscopy of kinetic intermediates.

Authors:  V Jayaraman; K R Rodgers; I Mukerji; T G Spiro
Journal:  Science       Date:  1995-09-29       Impact factor: 47.728

8.  Orientational changes of the absorbing dipole or retinal upon the conversion of rhodopsin to bathorhodopsin, lumirhodopsin, and isorhodopsin.

Authors:  M Michel-Villaz; C Roche; M Chabre
Journal:  Biophys J       Date:  1982-03       Impact factor: 4.033

9.  Time-resolved resonance Raman analysis of chromophore structural changes in the formation and decay of rhodopsin's BSI intermediate.

Authors:  Duohai Pan; Ziad Ganim; Judy E Kim; Michiel A Verhoeven; Johan Lugtenburg; Richard A Mathies
Journal:  J Am Chem Soc       Date:  2002-05-01       Impact factor: 15.419

10.  Time-resolved ultraviolet resonance Raman studies of protein structure: application to bacteriorhodopsin.

Authors:  J B Ames; M Ros; J Raap; J Lugtenburg; R A Mathies
Journal:  Biochemistry       Date:  1992-06-16       Impact factor: 3.162

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  12 in total

1.  Terahertz spectroscopy of bacteriorhodopsin and rhodopsin: similarities and differences.

Authors:  R Balu; H Zhang; E Zukowski; J-Y Chen; A G Markelz; S K Gregurick
Journal:  Biophys J       Date:  2008-01-16       Impact factor: 4.033

2.  Specificity of the chromophore-binding site in human cone opsins.

Authors:  Kota Katayama; Sahil Gulati; Joseph T Ortega; Nathan S Alexander; Wenyu Sun; Marina M Shenouda; Krzysztof Palczewski; Beata Jastrzebska
Journal:  J Biol Chem       Date:  2019-02-15       Impact factor: 5.157

Review 3.  UV resonance Raman investigations of peptide and protein structure and dynamics.

Authors:  Sulayman A Oladepo; Kan Xiong; Zhenmin Hong; Sanford A Asher; Joseph Handen; Igor K Lednev
Journal:  Chem Rev       Date:  2012-02-15       Impact factor: 60.622

4.  Update 1 of: Tunneling and dynamics in enzymatic hydride transfer.

Authors:  Zachary D Nagel; Judith P Klinman
Journal:  Chem Rev       Date:  2010-12-08       Impact factor: 60.622

5.  Resonance Raman analysis of the mechanism of energy storage and chromophore distortion in the primary visual photoproduct.

Authors:  Elsa C Y Yan; Ziad Ganim; Manija A Kazmi; Belinda S W Chang; Thomas P Sakmar; Richard A Mathies
Journal:  Biochemistry       Date:  2004-08-31       Impact factor: 3.162

6.  Electron crystallography reveals the structure of metarhodopsin I.

Authors:  Jonathan J Ruprecht; Thorsten Mielke; Reiner Vogel; Claudio Villa; Gebhard F X Schertler
Journal:  EMBO J       Date:  2004-08-26       Impact factor: 11.598

7.  Insights into Protein Structure and Dynamics by Ultraviolet and Visible Resonance Raman Spectroscopy.

Authors:  Ignacio López-Peña; Brian S Leigh; Diana E Schlamadinger; Judy E Kim
Journal:  Biochemistry       Date:  2015-07-29       Impact factor: 3.162

8.  Tryptophan as a probe of photosystem I electron transfer reactions: a UV resonance Raman study.

Authors:  Jun Chen; Shana L Bender; James M Keough; Bridgette A Barry
Journal:  J Phys Chem B       Date:  2009-08-20       Impact factor: 2.991

Review 9.  Protein dynamics from time resolved UV Raman spectroscopy.

Authors:  Gurusamy Balakrishnan; Colin L Weeks; Mohammed Ibrahim; Alexandra V Soldatova; Thomas G Spiro
Journal:  Curr Opin Struct Biol       Date:  2008-07-19       Impact factor: 6.809

10.  Primary protein response after ligand photodissociation in carbonmonoxy myoglobin.

Authors:  Akira Sato; Ying Gao; Teizo Kitagawa; Yasuhisa Mizutani
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-21       Impact factor: 11.205

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