Literature DB >> 18606227

Protein dynamics from time resolved UV Raman spectroscopy.

Gurusamy Balakrishnan1, Colin L Weeks, Mohammed Ibrahim, Alexandra V Soldatova, Thomas G Spiro.   

Abstract

Raman spectroscopy can provide unique information on the evolution of structure in proteins over a wide range of time scales; the picosecond to millisecond range can be accessed with pump-probe techniques. Specific parts of the molecule are interrogated by tuning the probe laser to a resonant electronic transition, including the UV transitions of aromatic residues and of the peptide bond. Advances in laser technology have enabled the characterization of transient species at an unprecedented level of structural detail. Applications to protein unfolding and allostery are reviewed.

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Year:  2008        PMID： 18606227      PMCID： PMC2583231          DOI： 10.1016/j.sbi.2008.06.001

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN： 0959-440X            Impact factor:   6.809


  34 in total

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Authors:  G K Ackers; J M Holt; Y Huang; Y Grinkova; A L Klinger; I Denisov
Journal:  Proteins       Date:  2000

2.  Picosecond dynamics of G-protein coupled receptor activation in rhodopsin from time-resolved UV resonance Raman spectroscopy.

Authors:  Judy E Kim; Duohai Pan; Richard A Mathies
Journal:  Biochemistry       Date:  2003-05-13       Impact factor: 3.162

Review 3.  Investigation of higher order structures of proteins by ultraviolet resonance Raman spectroscopy.

Authors:  T Kitagawa
Journal:  Prog Biophys Mol Biol       Date:  1992       Impact factor: 3.667

4.  Steady-state and transient ultraviolet resonance Raman spectrometer for the 193-270 nm spectral region.

Authors:  Sergei Bykov; Igor Lednev; Anatoli Ianoul; Aleksandr Mikhonin; Calum Munro; Sanford A Asher
Journal:  Appl Spectrosc       Date:  2005-12       Impact factor: 2.388

5.  X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel coiled coil.

Authors:  E K O'Shea; J D Klemm; P S Kim; T Alber
Journal:  Science       Date:  1991-10-25       Impact factor: 47.728

Review 6.  UV resonance Raman studies of molecular structure and dynamics: applications in physical and biophysical chemistry.

Authors:  S A Asher
Journal:  Annu Rev Phys Chem       Date:  1988       Impact factor: 12.703

7.  Spectroscopic and functional characterization of T state hemoglobin conformations encapsulated in silica gels.

Authors:  Uri Samuni; David Dantsker; Laura J Juszczak; Stefano Bettati; Luca Ronda; Andrea Mozzarelli; Joel M Friedman
Journal:  Biochemistry       Date:  2004-11-02       Impact factor: 3.162

8.  Tyrosine and tryptophan structure markers in hemoglobin ultraviolet resonance Raman spectra: mode assignments via subunit-specific isotope labeling of recombinant protein.

Authors:  X Hu; T G Spiro
Journal:  Biochemistry       Date:  1997-12-16       Impact factor: 3.162

9.  Time-resolved absorption and UV resonance Raman spectra reveal stepwise formation of T quaternary contacts in the allosteric pathway of hemoglobin.

Authors:  Gurusamy Balakrishnan; Martin A Case; Alex Pevsner; Xiaojie Zhao; Charbel Tengroth; George L McLendon; Thomas G Spiro
Journal:  J Mol Biol       Date:  2004-07-16       Impact factor: 5.469

10.  Hemoglobin site-mutants reveal dynamical role of interhelical H-bonds in the allosteric pathway: time-resolved UV resonance Raman evidence for intra-dimer coupling.

Authors:  Gurusamy Balakrishnan; Ching-Hsuan Tsai; Qiang Wu; Martin A Case; Alex Pevsner; George L McLendon; Chien Ho; Thomas G Spiro
Journal:  J Mol Biol       Date:  2004-07-16       Impact factor: 5.469
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  21 in total

1.  Energy landscape of the prion protein helix 1 probed by metadynamics and NMR.

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2.  Conformation types of ubiquitin [M+8H]8+ Ions from water:methanol solutions: evidence for the N and A States in aqueous solution.

Authors:  Huilin Shi; Nicholas A Pierson; Stephen J Valentine; David E Clemmer
Journal:  J Phys Chem B       Date:  2012-03-02       Impact factor: 2.991

Review 3.  An expanding arsenal of experimental methods yields an explosion of insights into protein folding mechanisms.

Authors:  Alice I Bartlett; Sheena E Radford
Journal:  Nat Struct Mol Biol       Date:  2009-06       Impact factor: 15.369

Review 4.  Structural determinants of protein folding.

Authors:  Tse Siang Kang; R Manjunatha Kini
Journal:  Cell Mol Life Sci       Date:  2009-04-15       Impact factor: 9.261

5.  Global distribution of conformational states derived from redundant models in the PDB points to non-uniqueness of the protein structure.

Authors:  Prasad V Burra; Ying Zhang; Adam Godzik; Boguslaw Stec
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-24       Impact factor: 11.205

6.  Substrate dynamics in enzyme action: rotations of monosaccharide subunits in the binding groove are essential for pectin methylesterase processivity.

Authors:  Davide Mercadante; Laurence D Melton; Geoffrey B Jameson; Martin A K Williams; Alfonso De Simone
Journal:  Biophys J       Date:  2013-04-16       Impact factor: 4.033

7.  Nanosecond time-resolved polarization spectroscopies: tools for probing protein reaction mechanisms.

Authors:  Eefei Chen; Robert A Goldbeck; David S Kliger
Journal:  Methods       Date:  2010-05-11       Impact factor: 3.608

8.  Perturbations of aromatic amino acids are associated with iron cluster assembly in ribonucleotide reductase.

Authors:  Adam R Offenbacher; Jun Chen; Bridgette A Barry
Journal:  J Am Chem Soc       Date:  2011-04-12       Impact factor: 15.419

9.  Probing soluble guanylate cyclase activation by CO and YC-1 using resonance Raman spectroscopy.

Authors:  Mohammed Ibrahim; Emily R Derbyshire; Michael A Marletta; Thomas G Spiro
Journal:  Biochemistry       Date:  2010-05-11       Impact factor: 3.162

10.  His26 protonation in cytochrome c triggers microsecond β-sheet formation and heme exposure: implications for apoptosis.

Authors:  Gurusamy Balakrishnan; Ying Hu; Thomas G Spiro
Journal:  J Am Chem Soc       Date:  2012-11-06       Impact factor: 15.419
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