Literature DB >> 17517618

Primary protein response after ligand photodissociation in carbonmonoxy myoglobin.

Akira Sato1, Ying Gao, Teizo Kitagawa, Yasuhisa Mizutani.   

Abstract

Time-resolved UV resonance Raman (UVRR) spectroscopic studies of WT and mutant myoglobin were performed to reveal the dynamics of protein motion after ligand dissociation. After dissociation of carbon monoxide (CO) from the heme, UVRR bands of Tyr showed a decrease in intensity with a time constant of 2 ps. The intensity decrease was followed by intensity recovery with a time constant of 8 ps. On the other hand, UVRR bands of Trp residues located in the A helix showed an intensity decrease that was completed within the instrument response time. The intensity decrease was followed by an intensity recovery with a time constant of approximately 50 ps and lasted up to 1 ns. The time-resolved UVRR study of the myoglobin mutants demonstrated that the hydrophobicity of environments around Trp-14 decreased, whereas that around Trp-7 barely changed in the primary protein response. The present data indicate that displacement of the E helix toward the heme occurs within the instrument response time and that movement of the FG corner takes place with a time constant of 2 ps. The finding that the instantaneous motion of the E helix strongly suggests a mechanism in which protein structural changes are propagated from the heme to the A helix through the E helix motion.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 17517618      PMCID: PMC1887578          DOI: 10.1073/pnas.0611560104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  25 in total

1.  Deoxymyoglobin studied by the conformational normal mode analysis. II. The conformational change upon oxygenation.

Authors:  Y Seno; N Go
Journal:  J Mol Biol       Date:  1990-11-05       Impact factor: 5.469

2.  Deoxymyoglobin studied by the conformational normal mode analysis. I. Dynamics of globin and the heme-globin interaction.

Authors:  Y Seno; N Go
Journal:  J Mol Biol       Date:  1990-11-05       Impact factor: 5.469

3.  Protein conformational relaxation following photodissociation of CO from carbonmonoxymyoglobin: picosecond circular dichroism and absorption studies.

Authors:  X L Xie; J D Simon
Journal:  Biochemistry       Date:  1991-04-16       Impact factor: 3.162

4.  Unveiling functional protein motions with picosecond x-ray crystallography and molecular dynamics simulations.

Authors:  Gerhard Hummer; Friedrich Schotte; Philip A Anfinrud
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-15       Impact factor: 11.205

Review 5.  Investigation of higher order structures of proteins by ultraviolet resonance Raman spectroscopy.

Authors:  T Kitagawa
Journal:  Prog Biophys Mol Biol       Date:  1992       Impact factor: 3.667

6.  The role of solvent viscosity in the dynamics of protein conformational changes.

Authors:  A Ansari; C M Jones; E R Henry; J Hofrichter; W A Eaton
Journal:  Science       Date:  1992-06-26       Impact factor: 47.728

7.  The role of Val68(E11) in ligand binding to sperm whale myoglobin. Site-directed mutagenesis of a synthetic gene.

Authors:  K D Egeberg; B A Springer; S G Sligar; T E Carver; R J Rohlfs; J S Olson
Journal:  J Biol Chem       Date:  1990-07-15       Impact factor: 5.157

8.  Pathway of information transmission from heme to protein upon ligand binding/dissociation in myoglobin revealed by UV resonance raman spectroscopy.

Authors:  Ying Gao; Samir F El-Mashtoly; Biswajit Pal; Takashi Hayashi; Katsuyoshi Harada; Teizo Kitagawa
Journal:  J Biol Chem       Date:  2006-06-14       Impact factor: 5.157

9.  Hemoglobin allostery: resonance Raman spectroscopy of kinetic intermediates.

Authors:  V Jayaraman; K R Rodgers; I Mukerji; T G Spiro
Journal:  Science       Date:  1995-09-29       Impact factor: 47.728

10.  Discrimination between oxygen and carbon monoxide and inhibition of autooxidation by myoglobin. Site-directed mutagenesis of the distal histidine.

Authors:  B A Springer; K D Egeberg; S G Sligar; R J Rohlfs; A J Mathews; J S Olson
Journal:  J Biol Chem       Date:  1989-02-25       Impact factor: 5.157

View more
  23 in total

1.  Picosecond primary structural transition of the heme is retarded after nitric oxide binding to heme proteins.

Authors:  Sergei G Kruglik; Byung-Kuk Yoo; Stefan Franzen; Marten H Vos; Jean-Louis Martin; Michel Negrerie
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-19       Impact factor: 11.205

2.  NO binding kinetics in myoglobin investigated by picosecond Fe K-edge absorption spectroscopy.

Authors:  Mahsa Silatani; Frederico A Lima; Thomas J Penfold; Jochen Rittmann; Marco E Reinhard; Hannelore M Rittmann-Frank; Camelia Borca; Daniel Grolimund; Christopher J Milne; Majed Chergui
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-05       Impact factor: 11.205

3.  Coarse-grained modeling of allosteric regulation in protein receptors.

Authors:  Ilya A Balabin; Weitao Yang; David N Beratan
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-12       Impact factor: 11.205

4.  Heme reactivity is uncoupled from quaternary structure in gel-encapsulated hemoglobin: a resonance Raman spectroscopic study.

Authors:  Eric M Jones; Gurusamy Balakrishnan; Thomas G Spiro
Journal:  J Am Chem Soc       Date:  2012-02-09       Impact factor: 15.419

5.  Ligand-induced protein responses and mechanical signal propagation described by linear response theories.

Authors:  Lee-Wei Yang; Akio Kitao; Bang-Chieh Huang; Nobuhiro Gō
Journal:  Biophys J       Date:  2014-09-16       Impact factor: 4.033

6.  Ultrafast anisotropic protein quake propagation after CO photodissociation in myoglobin.

Authors:  Levin U L Brinkmann; Jochen S Hub
Journal:  Proc Natl Acad Sci U S A       Date:  2016-09-06       Impact factor: 11.205

7.  Two-Dimensional Stimulated Ultraviolet Resonance Raman Spectra of Tyrosine and Tryptophan; A Simulation Study.

Authors:  Hao Ren; Jason D Biggs; Shaul Mukamel
Journal:  J Raman Spectrosc       Date:  2013-04       Impact factor: 3.133

8.  Why does binding of proteins to DNA or proteins to proteins not necessarily spell function?

Authors:  Buyong Ma; Chung-Jung Tsai; Yongping Pan; Ruth Nussinov
Journal:  ACS Chem Biol       Date:  2010-03-19       Impact factor: 5.100

9.  Nitric oxide dynamics in truncated hemoglobin: docking sites, migration pathways, and vibrational spectroscopy from molecular dynamics simulations.

Authors:  Sabyashachi Mishra; Markus Meuwly
Journal:  Biophys J       Date:  2009-03-18       Impact factor: 4.033

10.  Insights into Protein Structure and Dynamics by Ultraviolet and Visible Resonance Raman Spectroscopy.

Authors:  Ignacio López-Peña; Brian S Leigh; Diana E Schlamadinger; Judy E Kim
Journal:  Biochemistry       Date:  2015-07-29       Impact factor: 3.162

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.