Literature DB >> 15323547

Resonance Raman analysis of the mechanism of energy storage and chromophore distortion in the primary visual photoproduct.

Elsa C Y Yan1, Ziad Ganim, Manija A Kazmi, Belinda S W Chang, Thomas P Sakmar, Richard A Mathies.   

Abstract

The vibrational structure of the chromophore in the primary photoproduct of vision, bathorhodopsin, is examined to determine the cause of the anomalously decoupled and intense C(11)=C(12) hydrogen-out-of-plane (HOOP) wagging modes and their relation to energy storage in the primary photoproduct. Low-temperature (77 K) resonance Raman spectra of Glu181 and Ser186 mutants of bovine rhodopsin reveal only mild mutagenic perturbations of the photoproduct spectrum suggesting that dipolar, electrostatic, or steric interactions with these residues do not cause the HOOP mode frequencies and intensities. Density functional theory calculations are performed to investigate the effect of geometric distortion on the HOOP coupling. The decoupled HOOP modes can be simulated by imposing approximately 40 degrees twists in the same direction about the C(11)=C(12) and C(12)-C(13) bonds. Sequence comparison and examination of the binding site suggests that these distortions are caused by three constraints consisting of an electrostatic anchor between the protonated Schiff base and the Glu113 counterion, as well as steric interactions of the 9- and 13-methyl groups with surrounding residues. This distortion stores light energy that is used to drive the subsequent protein conformational changes that activate rhodopsin.

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Year:  2004        PMID: 15323547      PMCID: PMC1428786          DOI: 10.1021/bi0400148

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  43 in total

1.  Molden: a pre- and post-processing program for molecular and electronic structures.

Authors:  G Schaftenaar; J H Noordik
Journal:  J Comput Aided Mol Des       Date:  2000-02       Impact factor: 3.686

Review 2.  Activation of rhodopsin: new insights from structural and biochemical studies.

Authors:  T Okada; O P Ernst; K Palczewski; K P Hofmann
Journal:  Trends Biochem Sci       Date:  2001-05       Impact factor: 13.807

3.  Picosecond dynamics of G-protein coupled receptor activation in rhodopsin from time-resolved UV resonance Raman spectroscopy.

Authors:  Judy E Kim; Duohai Pan; Richard A Mathies
Journal:  Biochemistry       Date:  2003-05-13       Impact factor: 3.162

4.  Nano- and microsecond time-resolved FTIR spectroscopy of the halorhodopsin photocycle.

Authors:  A K Dioumaev; M S Braiman
Journal:  Photochem Photobiol       Date:  1997-12       Impact factor: 3.421

5.  Energy storage in the primary photochemical events of rhodopsin and isorhodopsin.

Authors:  G A Schick; T M Cooper; R A Holloway; L P Murray; R R Birge
Journal:  Biochemistry       Date:  1987-05-05       Impact factor: 3.162

6.  Resonance Raman spectroscopy of rhodopsin in retinal disk membranes.

Authors:  A R Oseroff; R H Callender
Journal:  Biochemistry       Date:  1974-09-24       Impact factor: 3.162

7.  Resonance Raman studies of bathorhodopsin: evidence for a protonated Schiff base linkage.

Authors:  G Eyring; R Mathies
Journal:  Proc Natl Acad Sci U S A       Date:  1979-01       Impact factor: 11.205

8.  Time-resolved resonance Raman analysis of chromophore structural changes in the formation and decay of rhodopsin's BSI intermediate.

Authors:  Duohai Pan; Ziad Ganim; Judy E Kim; Michiel A Verhoeven; Johan Lugtenburg; Richard A Mathies
Journal:  J Am Chem Soc       Date:  2002-05-01       Impact factor: 15.419

9.  NMR constraints on the location of the retinal chromophore in rhodopsin and bathorhodopsin.

Authors:  M Han; S O Smith
Journal:  Biochemistry       Date:  1995-01-31       Impact factor: 3.162

10.  Raman microscope studies on the primary photochemistry of vertebrate visual pigments with absorption maxima from 430 to 502 nm.

Authors:  B Barry; R A Mathies
Journal:  Biochemistry       Date:  1987-01-13       Impact factor: 3.162

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  17 in total

1.  A large geometric distortion in the first photointermediate of rhodopsin, determined by double-quantum solid-state NMR.

Authors:  Maria Concistrè; Ole G Johannessen; Neville McLean; Petra H M Bovee-Geurts; Richard C D Brown; Willem J Degrip; Malcolm H Levitt
Journal:  J Biomol NMR       Date:  2012-05-26       Impact factor: 2.835

2.  Anabaena sensory rhodopsin is a light-driven unidirectional rotor.

Authors:  Angela Strambi; Bo Durbeej; Nicolas Ferré; Massimo Olivucci
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-22       Impact factor: 11.205

3.  Terahertz spectroscopy of bacteriorhodopsin and rhodopsin: similarities and differences.

Authors:  R Balu; H Zhang; E Zukowski; J-Y Chen; A G Markelz; S K Gregurick
Journal:  Biophys J       Date:  2008-01-16       Impact factor: 4.033

4.  Thermal stability of rhodopsin and progression of retinitis pigmentosa: comparison of S186W and D190N rhodopsin mutants.

Authors:  Monica Yun Liu; Jian Liu; Devi Mehrotra; Yuting Liu; Ying Guo; Pedro A Baldera-Aguayo; Victoria L Mooney; Adel M Nour; Elsa C Y Yan
Journal:  J Biol Chem       Date:  2013-04-26       Impact factor: 5.157

5.  Low-Temperature Trapping of Photointermediates of the Rhodopsin E181Q Mutant.

Authors:  Megan N Sandberg; Jordan A Greco; Nicole L Wagner; Tabitha L Amora; Lavoisier A Ramos; Min-Hsuan Chen; Barry E Knox; Robert R Birge
Journal:  SOJ Biochem       Date:  2014

6.  Specificity of the chromophore-binding site in human cone opsins.

Authors:  Kota Katayama; Sahil Gulati; Joseph T Ortega; Nathan S Alexander; Wenyu Sun; Marina M Shenouda; Krzysztof Palczewski; Beata Jastrzebska
Journal:  J Biol Chem       Date:  2019-02-15       Impact factor: 5.157

7.  Re-evaluation of rhodopsin's relaxation kinetics determined from femtosecond stimulated Raman lineshapes.

Authors:  David W McCamant
Journal:  J Phys Chem B       Date:  2011-06-29       Impact factor: 2.991

8.  Glutamic acid 181 is negatively charged in the bathorhodopsin photointermediate of visual rhodopsin.

Authors:  Megan N Sandberg; Tabitha L Amora; Lavoisier S Ramos; Min-Hsuan Chen; Barry E Knox; Robert R Birge
Journal:  J Am Chem Soc       Date:  2011-02-14       Impact factor: 15.419

Review 9.  Retinal dynamics during light activation of rhodopsin revealed by solid-state NMR spectroscopy.

Authors:  Michael F Brown; Gilmar F J Salgado; Andrey V Struts
Journal:  Biochim Biophys Acta       Date:  2009-08-28

10.  Insights into Protein Structure and Dynamics by Ultraviolet and Visible Resonance Raman Spectroscopy.

Authors:  Ignacio López-Peña; Brian S Leigh; Diana E Schlamadinger; Judy E Kim
Journal:  Biochemistry       Date:  2015-07-29       Impact factor: 3.162

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