Literature DB >> 12586730

Mosaicism of Solid Gold supports the causality of a noncoding A-to-G transition in the determinism of the callipyge phenotype.

Maria Smit1, Karin Segers, Laura Garcia Carrascosa, Tracy Shay, Francesca Baraldi, Gabor Gyapay, Gary Snowder, Michel Georges, Noelle Cockett, Carole Charlier.   

Abstract

To identify the callipyge mutation, we have resequenced 184 kb spanning the DLK1-, GTL2-, PEG11-, and MEG8-imprinted domain and have identified an A-to-G transition in a highly conserved dodecamer motif between DLK1 and GTL2. This was the only difference found between the callipyge (CLPG) allele and a phylogenetically closely related wild-type allele. We report that this SNP is in perfect association with the callipyge genotype. The demonstration that Solid Gold-the alleged founder ram of the callipyge flock-is mosaic for this SNP virtually proves the causality of this SNP in the determinism of the callipyge phenotype.

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Mesh:

Year:  2003        PMID: 12586730      PMCID: PMC1462405     

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  7 in total

1.  Fine-mapping and construction of a bovine contig spanning the ovine callipyge locus.

Authors:  T L Shay; S Berghmans; K Segers; S Meyers; J E Beever; J E Womack; M Georges; C Charlier; N E Cockett
Journal:  Mamm Genome       Date:  2001-02       Impact factor: 2.957

2.  ViewGene: a graphical tool for polymorphism visualization and characterization.

Authors:  Carl Kashuk; Sanghamitra SenGupta; Evan Eichler; Aravinda Chakravarti
Journal:  Genome Res       Date:  2002-02       Impact factor: 9.043

3.  Comparative mapping of the ovine clpg locus.

Authors:  S C Fahrenkrug; B A Freking; C E Rexroad; K A Leymaster; S M Kappes; T P Smith
Journal:  Mamm Genome       Date:  2000-10       Impact factor: 2.957

4.  Hot-stop PCR: a simple and general assay for linear quantitation of allele ratios.

Authors:  H Uejima; M P Lee; H Cui; A P Feinberg
Journal:  Nat Genet       Date:  2000-08       Impact factor: 38.330

5.  Identification of the single base change causing the callipyge muscle hypertrophy phenotype, the only known example of polar overdominance in mammals.

Authors:  Brad A Freking; Susan K Murphy; Andrew A Wylie; Simon J Rhodes; John W Keele; Kreg A Leymaster; Randy L Jirtle; Timothy P L Smith
Journal:  Genome Res       Date:  2002-10       Impact factor: 9.043

6.  Polar overdominance at the ovine callipyge locus.

Authors:  N E Cockett; S P Jackson; T L Shay; F Farnir; S Berghmans; G D Snowder; D M Nielsen; M Georges
Journal:  Science       Date:  1996-07-12       Impact factor: 47.728

7.  Human-ovine comparative sequencing of a 250-kb imprinted domain encompassing the callipyge (clpg) locus and identification of six imprinted transcripts: DLK1, DAT, GTL2, PEG11, antiPEG11, and MEG8.

Authors:  C Charlier; K Segers; D Wagenaar; L Karim; S Berghmans; O Jaillon; T Shay; J Weissenbach; N Cockett; G Gyapay; M Georges
Journal:  Genome Res       Date:  2001-05       Impact factor: 9.043

  7 in total
  36 in total

1.  Haplotype sharing refines the location of an imprinted quantitative trait locus with major effect on muscle mass to a 250-kb chromosome segment containing the porcine IGF2 gene.

Authors:  Carine Nezer; Catherine Collette; Laurence Moreau; Benoît Brouwers; Jong-Joo Kim; Elisabetta Giuffra; Nadine Buys; Leif Andersson; Michel Georges
Journal:  Genetics       Date:  2003-09       Impact factor: 4.562

2.  Polymorphism of DLK1 and CLPG gene and their association with phenotypic traits in Chinese cattle.

Authors:  F Y Chen; H Niu; J Q Wang; C Z Lei; X Y Lan; C L Zhang; M J Li; L S Hua; J Wang; H Chen
Journal:  Mol Biol Rep       Date:  2010-03-30       Impact factor: 2.316

3.  Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing.

Authors:  Florian Caiment; Carole Charlier; Tracy Hadfield; Noelle Cockett; Michel Georges; Denis Baurain
Journal:  Genome Res       Date:  2010-10-13       Impact factor: 9.043

4.  BEGAIN: a novel imprinted gene that generates paternally expressed transcripts in a tissue- and promoter-specific manner in sheep.

Authors:  Maria A Smit; Xavier Tordoir; Gabor Gyapay; Noelle E Cockett; Michel Georges; Carole Charlier
Journal:  Mamm Genome       Date:  2005-10-29       Impact factor: 2.957

5.  Callipyge mutation affects gene expression in cis: a potential role for chromatin structure.

Authors:  Susan K Murphy; Catherine M Nolan; Zhiqing Huang; Katerina S Kucera; Brad A Freking; Timothy P L Smith; Kreg A Leymaster; Jennifer R Weidman; Randy L Jirtle
Journal:  Genome Res       Date:  2006-01-13       Impact factor: 9.043

6.  The callipyge mutation enhances bidirectional long-range DLK1-GTL2 intergenic transcription in cis.

Authors:  Haruko Takeda; Florian Caiment; Maria Smit; Samuel Hiard; Xavier Tordoir; Noelle Cockett; Michel Georges; Carole Charlier
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-11       Impact factor: 11.205

7.  Compelling evidence that a single nucleotide substitution in TYRP1 is responsible for coat-colour polymorphism in a free-living population of Soay sheep.

Authors:  J Gratten; D Beraldi; B V Lowder; A F McRae; P M Visscher; J M Pemberton; J Slate
Journal:  Proc Biol Sci       Date:  2007-03-07       Impact factor: 5.349

8.  Effects and interactions of myostatin and callipyge mutations: I. Growth and carcass traits.

Authors:  Brad A Freking; David A King; Steven D Shackelford; Tommy L Wheeler; Tim P L Smith
Journal:  J Anim Sci       Date:  2018-03-06       Impact factor: 3.159

Review 9.  Noncoding RNA in development.

Authors:  Paulo P Amaral; John S Mattick
Journal:  Mamm Genome       Date:  2008-10-07       Impact factor: 2.957

10.  Genome-wide assessment of worldwide chicken SNP genetic diversity indicates significant absence of rare alleles in commercial breeds.

Authors:  William M Muir; Gane Ka-Shu Wong; Yong Zhang; Jun Wang; Martien A M Groenen; Richard P M A Crooijmans; Hendrik-Jan Megens; Huanmin Zhang; Ron Okimoto; Addie Vereijken; Annemieke Jungerius; Gerard A A Albers; Cindy Taylor Lawley; Mary E Delany; Sean MacEachern; Hans H Cheng
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-03       Impact factor: 11.205

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