Literature DB >> 11337479

Human-ovine comparative sequencing of a 250-kb imprinted domain encompassing the callipyge (clpg) locus and identification of six imprinted transcripts: DLK1, DAT, GTL2, PEG11, antiPEG11, and MEG8.

C Charlier1, K Segers, D Wagenaar, L Karim, S Berghmans, O Jaillon, T Shay, J Weissenbach, N Cockett, G Gyapay, M Georges.   

Abstract

Two ovine BAC clones and a connecting long-range PCR product, jointly spanning approximately 250 kb and representing most of the MULGE5-OY3 marker interval known to contain the clpg locus, were completely sequenced. The resulting genomic sequence was aligned with its human ortholog and extensively annotated. Six transcripts, four of which were novel, were predicted to originate from within the analyzed region and their existence confirmed experimentally: DLK1, DAT, GTL2, PEG11, antiPEG11, and MEG8. RT-PCR experiments performed on a range of tissues sampled from an 8-wk-old animal demonstrated the preferential expression of all six transcripts in skeletal muscle, which suggests that they are under control of common regulatory elements. The six transcripts were also shown to be subject to parental imprinting: DLK1, DAT, and PEG11 were shown to be paternally expressed and GTL2, antiPEG11, and MEG8 to be maternally expressed.

Entities:  

Mesh:

Substances:

Year:  2001        PMID: 11337479      PMCID: PMC311092          DOI: 10.1101/gr.172701

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  36 in total

1.  CpG islands as gene markers in the human genome.

Authors:  F Larsen; G Gundersen; R Lopez; H Prydz
Journal:  Genomics       Date:  1992-08       Impact factor: 5.736

2.  Histology and composition of muscles from normal and callipyge lambs.

Authors:  C E Carpenter; O D Rice; N E Cockett; G D Snowder
Journal:  J Anim Sci       Date:  1996-02       Impact factor: 3.159

3.  Gtl2lacZ, an insertional mutation on mouse chromosome 12 with parental origin-dependent phenotype.

Authors:  K Schuster-Gossler; D Simon-Chazottes; J L Guenet; J Zachgo; A Gossler
Journal:  Mamm Genome       Date:  1996-01       Impact factor: 2.957

Review 4.  The human genome: organization and evolutionary history.

Authors:  G Bernardi
Journal:  Annu Rev Genet       Date:  1995       Impact factor: 16.830

5.  Polar overdominance at the ovine callipyge locus.

Authors:  N E Cockett; S P Jackson; T L Shay; F Farnir; S Berghmans; G D Snowder; D M Nielsen; M Georges
Journal:  Science       Date:  1996-07-12       Impact factor: 47.728

6.  Cleavage of membrane-associated pref-1 generates a soluble inhibitor of adipocyte differentiation.

Authors:  C M Smas; L Chen; H S Sul
Journal:  Mol Cell Biol       Date:  1997-02       Impact factor: 4.272

7.  Phenotypic characterization of rambouillet sheep expressing the callipyge gene: I. Inheritance of the condition and production characteristics.

Authors:  S P Jackson; R D Green; M F Miller
Journal:  J Anim Sci       Date:  1997-01       Impact factor: 3.159

8.  Phenotypic characterization of Rambouillet sheep expressing the callipyge gene: II. Carcass characteristics and retail yield.

Authors:  S P Jackson; M F Miller; R D Green
Journal:  J Anim Sci       Date:  1997-01       Impact factor: 3.159

9.  dlk, pG2 and Pref-1 mRNAs encode similar proteins belonging to the EGF-like superfamily. Identification of polymorphic variants of this RNA.

Authors:  Y L Lee; L Helman; T Hoffman; J Laborda
Journal:  Biochim Biophys Acta       Date:  1995-04-04

10.  Chromosomal localization of the callipyge gene in sheep (Ovis aries) using bovine DNA markers.

Authors:  N E Cockett; S P Jackson; T L Shay; D Nielsen; S S Moore; M R Steele; W Barendse; R D Green; M Georges
Journal:  Proc Natl Acad Sci U S A       Date:  1994-04-12       Impact factor: 11.205

View more
  67 in total

1.  Mosaicism of Solid Gold supports the causality of a noncoding A-to-G transition in the determinism of the callipyge phenotype.

Authors:  Maria Smit; Karin Segers; Laura Garcia Carrascosa; Tracy Shay; Francesca Baraldi; Gabor Gyapay; Gary Snowder; Michel Georges; Noelle Cockett; Carole Charlier
Journal:  Genetics       Date:  2003-01       Impact factor: 4.562

2.  Identification of the single base change causing the callipyge muscle hypertrophy phenotype, the only known example of polar overdominance in mammals.

Authors:  Brad A Freking; Susan K Murphy; Andrew A Wylie; Simon J Rhodes; John W Keele; Kreg A Leymaster; Randy L Jirtle; Timothy P L Smith
Journal:  Genome Res       Date:  2002-10       Impact factor: 9.043

3.  Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing.

Authors:  Florian Caiment; Carole Charlier; Tracy Hadfield; Noelle Cockett; Michel Georges; Denis Baurain
Journal:  Genome Res       Date:  2010-10-13       Impact factor: 9.043

4.  BEGAIN: a novel imprinted gene that generates paternally expressed transcripts in a tissue- and promoter-specific manner in sheep.

Authors:  Maria A Smit; Xavier Tordoir; Gabor Gyapay; Noelle E Cockett; Michel Georges; Carole Charlier
Journal:  Mamm Genome       Date:  2005-10-29       Impact factor: 2.957

5.  Allele-specific methylation of a functional CTCF binding site upstream of MEG3 in the human imprinted domain of 14q32.

Authors:  Alberto L Rosa; Yuan-Qing Wu; Bernard Kwabi-Addo; Karen J Coveler; V Reid Sutton; Lisa G Shaffer
Journal:  Chromosome Res       Date:  2005-12-08       Impact factor: 5.239

6.  Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome.

Authors:  Timothy Ravasi; Harukazu Suzuki; Ken C Pang; Shintaro Katayama; Masaaki Furuno; Rie Okunishi; Shiro Fukuda; Kelin Ru; Martin C Frith; M Milena Gongora; Sean M Grimmond; David A Hume; Yoshihide Hayashizaki; John S Mattick
Journal:  Genome Res       Date:  2005-12-12       Impact factor: 9.043

7.  Callipyge mutation affects gene expression in cis: a potential role for chromatin structure.

Authors:  Susan K Murphy; Catherine M Nolan; Zhiqing Huang; Katerina S Kucera; Brad A Freking; Timothy P L Smith; Kreg A Leymaster; Jennifer R Weidman; Randy L Jirtle
Journal:  Genome Res       Date:  2006-01-13       Impact factor: 9.043

8.  The callipyge mutation enhances bidirectional long-range DLK1-GTL2 intergenic transcription in cis.

Authors:  Haruko Takeda; Florian Caiment; Maria Smit; Samuel Hiard; Xavier Tordoir; Noelle Cockett; Michel Georges; Carole Charlier
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-11       Impact factor: 11.205

9.  Novel deletions affecting the MEG3-DMR provide further evidence for a hierarchical regulation of imprinting in 14q32.

Authors:  Jasmin Beygo; Miriam Elbracht; Karel de Groot; Matthias Begemann; Deniz Kanber; Konrad Platzer; Gabriele Gillessen-Kaesbach; Anne Vierzig; Andrew Green; Raoul Heller; Karin Buiting; Thomas Eggermann
Journal:  Eur J Hum Genet       Date:  2014-05-07       Impact factor: 4.246

10.  Array CGH defined interstitial deletion on chromosome 14: a new case.

Authors:  Maria Piccione; Vincenzo Antona; Valeria Scavone; Michela Malacarne; Mauro Pierluigi; Marina Grasso; Giovanni Corsello
Journal:  Eur J Pediatr       Date:  2010-01-21       Impact factor: 3.183

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.